Detailed information of deep learning profile BP000261.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in KMS-11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000261.1
Cell line/tissue: KMS-11
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR430YRJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.15 0.11 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3655 3255 3038 4344 5648 4146 3126 3701 3145 3383 4041 4019 4211 4214 3776 2559 3611 4537 1760 721 9912 1554 2592 13217 263 5350 1260 324 678 2758 5909 1856 2633 5553 2993 4610 3560 4381 3822 3785 4259 4940 3643 4083 4335 4416 4323 4304 4182 4152 ]
C [ 3887 2931 4112 5170 3549 3280 2791 4007 6749 5832 5082 4758 4283 3998 4482 5406 3759 2029 12263 15120 1325 8407 6226 478 91 131 604 175 1067 11114 1494 8173 5306 3914 3490 3265 3268 4259 4920 5703 4869 3786 4398 3945 3800 3937 4028 4023 4183 4198 ]
G [ 4194 5633 5651 3082 3870 3823 3644 3803 2681 3041 3610 3879 3796 3535 3994 2703 5235 6931 1338 375 2403 5901 1567 1566 16022 10764 9800 15651 13330 1031 7902 4385 1960 4795 4276 3753 6674 4385 4489 3007 3215 4260 4415 4505 4433 3921 3984 4355 4470 4348 ]
T [ 4787 4704 3722 3927 3456 5274 6962 5012 3948 4267 3790 3867 4233 4776 4271 5855 3918 3026 1162 307 2883 661 6138 1262 147 278 4859 373 1448 1620 1218 2109 6624 2261 5764 4895 3021 3498 3292 4028 4180 3537 4067 3990 3955 4249 4188 3841 3688 3825 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.01 -0.01 0.09 -0.05 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.11 0.17 -0.02 0.10 0.05 -0.00 -0.03 -0.07 -0.01 -0.03 -0.04 0.12 -0.02 0.06 0.04 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.06 0.05 -0.01 0.02 0.17 0.12 0.10 0.16 0.12 -0.03 0.11 0.03 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.06 0.06 -0.02 -0.04 -0.07 0.03 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 537

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages