Detailed information of deep learning profile BP000253.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000253.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR408XTO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4044 4076 3991 3815 3894 4431 4250 4128 4098 4226 3689 4392 4225 3436 3588 3147 4961 5746 2152 7068 1978 1160 1683 1357 305 5997 246 221 1359 5798 696 2890 222 1260 3231 4172 5953 4550 4919 4296 4044 3953 4407 4293 4883 6489 5109 3584 3856 3819 ]
C [ 4414 4338 4446 4555 4489 4143 4111 4410 4685 4670 4461 3139 2969 4412 4635 6875 3751 4476 4999 2053 5037 8122 694 14547 16199 8587 10572 16351 1854 1635 6386 2738 268 1466 6959 5288 2905 4133 3563 3917 4013 3827 3305 3075 4020 3865 4129 4039 3390 5304 ]
G [ 4351 4220 4189 4284 4159 4044 3893 3891 4003 4394 3699 5133 6065 5290 4338 3235 3328 3659 4002 5300 8172 1090 11818 630 107 892 199 97 502 6719 8438 1109 15533 12298 2180 3671 5394 4459 4158 4502 4606 5070 5626 6206 4148 3244 3505 3719 5116 4380 ]
T [ 4155 4330 4338 4310 4422 4346 4710 4535 4178 3674 5115 4300 3705 3826 4403 3707 4924 3083 5811 2543 1777 6592 2769 430 353 1488 5947 295 13249 2812 1444 10227 941 1940 4594 3833 2712 3822 4324 4249 4301 4114 3626 3390 3913 3366 4221 5622 4602 3461 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.02 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.10 -0.02 0.11 0.14 0.08 0.11 0.15 0.01 -0.02 0.04 0.06 -0.03 -0.03 0.04 0.03 -0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.11 -0.03 -0.04 0.00 -0.06 -0.03 -0.01 0.05 0.10 -0.02 0.15 0.10 -0.02 0.02 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.05 0.04 -0.04 0.08 -0.02 -0.02 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages