Detailed information of deep learning profile BP000255.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000255.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR414CQB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3778 4868 5968 4548 3604 4294 3629 4021 4469 4493 4521 4625 4245 3010 4128 4946 2216 771 11196 1725 3138 14088 390 6548 1494 342 453 2903 7012 1781 2637 6388 3197 5205 3890 4780 4236 4036 4625 5482 3979 4640 4795 4958 4786 4824 4683 4611 4715 4553 ]
C [ 4592 5301 3982 3927 3396 4531 6665 5893 5440 5017 4767 4559 4783 5899 3884 2382 12865 16682 1429 8922 6627 588 111 182 705 109 669 13161 1070 9665 5992 4295 3819 3557 3499 4778 5628 6496 5655 4114 4940 4361 4216 4340 4385 4483 4637 4564 4535 4671 ]
G [ 5734 3703 4348 4300 4203 4268 3434 3615 4102 4465 4335 3943 4456 3090 5673 7494 1708 529 2507 6880 1903 2083 17636 11378 9818 17598 15717 636 9070 4819 1699 5328 4622 3925 7447 4766 4727 3172 3273 4680 4917 4868 4886 4321 4423 4809 4910 4864 4692 4735 ]
T [ 4224 4456 4030 5553 7125 5235 4600 4799 4317 4353 4705 5201 4844 6329 4643 3506 1539 346 3196 801 6660 1569 191 220 6311 279 1489 1628 1176 2063 8000 2317 6690 5641 3492 4004 3737 4624 4775 4052 4492 4459 4431 4709 4734 4212 4098 4289 4386 4369 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.05 0.05 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.04 -0.00 -0.03 -0.05 -0.01 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.03 0.06 0.04 -0.01 0.02 0.16 0.11 0.09 0.15 0.12 -0.03 0.12 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 899

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 541

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 188

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages