Detailed information of deep learning profile BP000256.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000256.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR419ANE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.05 0.04 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4100 3653 3596 4850 6047 4328 3554 4076 3500 3796 4220 4513 4495 4549 3974 2739 3988 4863 1821 592 11036 1276 2835 14166 251 6401 1651 334 804 3383 6697 2132 2975 6056 3393 5111 3960 4523 4087 4026 4609 5289 3947 4427 4715 4808 4665 4616 4546 4540 ]
C [ 4257 3455 4563 5404 3969 3740 3155 4467 6919 6055 5427 4861 4730 4316 4802 5990 3869 2176 13581 16914 1038 9527 6896 460 89 234 940 122 1337 11539 1610 8106 5553 4048 3779 3554 3430 4659 5583 6212 5339 3918 4782 4255 4189 4293 4233 4350 4522 4564 ]
G [ 4514 5844 5638 3539 4204 4285 4073 4201 3080 3414 4024 4204 4080 3619 4336 2795 5649 7543 1222 175 2751 6410 1609 1952 17359 10922 9452 17129 14153 1097 8201 5359 2388 5240 4850 4025 7014 4845 4542 3246 3444 4740 4786 4896 4683 4163 4277 4869 4829 4658 ]
T [ 4989 4908 4063 4067 3640 5507 7078 5116 4361 4595 4189 4282 4555 5376 4748 6336 4354 3278 1236 179 3035 647 6520 1282 161 303 5817 275 1566 1841 1352 2263 6944 2516 5838 5170 3456 3833 3648 4376 4468 3913 4345 4282 4273 4596 4685 4025 3963 4098 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.02 0.07 -0.05 0.03 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.02 -0.01 0.10 0.14 -0.02 0.09 0.04 -0.02 -0.03 -0.06 -0.00 -0.03 -0.03 0.09 -0.02 0.04 0.03 0.01 0.00 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.02 0.04 -0.03 -0.03 0.05 0.03 -0.02 0.01 0.14 0.10 0.07 0.12 0.09 -0.02 0.09 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 382

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 327

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages