Detailed information of deep learning profile BP000258.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000258.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR423ZUM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.19 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 0.00 0.00 -0.00 -0.00 0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4283 4237 4425 5103 4918 4524 4490 4695 4069 4910 4852 3805 4080 3539 5720 6775 2308 7753 2237 1157 1665 1635 288 6264 233 164 1567 7271 760 2876 247 1491 3457 4557 6828 5023 5520 4832 4570 4417 4940 4805 5488 7410 5872 4020 4529 4373 5264 5341 ]
C [ 4984 5119 5112 4398 4430 5053 5168 5099 5061 3373 3064 4722 5189 7757 4170 4903 5532 2177 5644 9142 827 15866 18275 10582 11462 18446 1998 1787 6904 2941 286 1595 8168 6046 3111 4807 4034 4477 4584 4380 3668 3381 4472 4352 4578 4570 3817 6041 6249 4818 ]
G [ 4849 4814 4599 4484 4350 4378 4525 5238 4016 5884 6978 6172 5032 3517 3704 3999 4544 6259 9275 1158 13632 961 122 828 169 82 610 6748 9838 1248 17824 13833 2383 4102 6192 4930 4547 4912 5216 5629 6377 7161 4746 3530 3919 4166 5657 4854 3641 4553 ]
T [ 4909 4855 4889 5040 5327 5070 4842 3993 5879 4858 4131 4326 4724 4212 5431 3348 6641 2836 1869 7568 2901 563 340 1351 7161 333 14850 3219 1523 11960 668 2106 5017 4320 2894 4265 4924 4804 4655 4599 4040 3678 4319 3733 4656 6269 5022 3757 3871 4313 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.05 -0.03 0.06 -0.06 -0.04 -0.07 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.04 -0.00 0.06 0.15 -0.02 0.15 0.19 0.12 0.15 0.20 0.04 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.02 0.15 -0.02 -0.03 0.02 -0.05 -0.01 0.01 0.07 0.13 -0.00 0.20 0.13 -0.00 0.05 0.06 0.03 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.05 -0.07 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3653

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 204

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages