Detailed information of deep learning profile BP000844.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000844.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR568ZXG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.04 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.01 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 0.00 0.03 -0.00 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 204 187 186 175 202 196 199 211 191 185 207 203 208 194 208 210 183 234 239 191 183 355 2 4 814 43 54 0 9 858 8 116 225 173 181 187 175 200 168 171 195 184 168 188 179 191 188 197 204 202 ]
C [ 222 216 245 261 239 206 236 219 210 260 219 255 229 248 217 214 246 230 207 224 94 150 5 10 5 385 58 3 847 0 310 498 257 252 271 242 241 225 247 219 242 261 247 238 257 267 229 231 239 219 ]
G [ 200 262 247 220 238 246 236 233 249 238 234 225 239 225 263 278 249 230 260 253 489 335 4 745 27 185 751 3 5 6 136 77 226 230 226 231 245 248 225 276 221 228 257 228 243 215 237 239 235 235 ]
T [ 238 199 186 208 185 216 193 201 214 181 204 181 188 197 176 162 186 170 158 196 98 24 853 105 18 251 1 858 3 0 410 173 156 209 186 204 203 191 224 198 206 191 192 210 185 191 210 197 186 208 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.01 -0.01 -0.01 0.03 -0.01 0.00 -0.01 0.02 0.04 -0.02 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.01 -0.01 0.02 0.00 -0.00 0.02 -0.02 0.01 0.01 0.00 0.00 0.00 ]
G [ -0.00 0.00 0.00 0.01 0.01 -0.01 0.02 0.00 -0.00 0.02 -0.02 -0.01 -0.01 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.02 0.03 0.02 -0.00 0.00 -0.02 0.03 -0.01 -0.01 0.01 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3030

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 804

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 228

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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