Detailed information of deep learning profile BP000839.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000839.1
Cell line/tissue: HCT116
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BUG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 0.02 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 152 136 162 147 138 144 124 142 122 152 135 179 131 134 143 117 162 127 138 170 115 121 284 2 1 502 52 13 43 50 521 7 69 162 104 131 142 140 130 131 153 165 124 123 138 143 140 125 146 140 ]
C [ 110 115 115 124 119 101 122 122 134 113 132 106 106 115 148 146 107 122 127 102 91 59 83 4 0 0 65 34 10 462 0 102 285 147 135 126 126 123 118 118 121 109 103 106 129 125 97 133 132 110 ]
G [ 127 136 120 111 115 128 119 115 111 122 128 105 107 117 104 114 114 127 138 143 173 280 145 1 483 7 84 461 3 8 2 61 62 102 114 133 103 116 138 134 115 108 132 155 110 101 135 125 91 120 ]
T [ 135 137 127 142 152 151 159 145 157 137 129 134 180 158 129 147 141 148 121 109 145 64 12 517 40 15 323 16 468 4 1 354 108 113 171 134 153 145 138 141 135 142 165 140 147 155 152 141 155 154 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.01 -0.00 0.01 -0.02 -0.02 0.02 -0.02 -0.00 -0.01 0.01 0.02 -0.02 -0.00 0.00 -0.01 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 0.00 0.02 -0.01 0.01 0.01 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 0.01 -0.01 0.02 0.00 -0.01 0.02 -0.02 -0.02 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.02 0.02 0.01 -0.01 0.00 -0.01 0.02 -0.02 -0.02 0.01 -0.00 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2579

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 286

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 46

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 26

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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