Detailed information of deep learning profile BP000845.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000845.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR632DCH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 0.09 -0.00 0.00 0.00 0.00 0.12 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.00 0.09 0.00 0.01 0.02 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 0.01 0.00 0.09 0.00 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.10 0.00 -0.00 0.01 -0.00 0.09 0.00 0.00 0.04 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1255 1294 1250 1347 1383 1330 1399 1312 1302 1280 1344 1400 1265 1240 1410 1429 1355 1305 1394 1542 1366 1329 2901 9 13 4765 202 114 78 33 4822 21 750 1493 1041 1076 1239 1233 1196 1299 1430 1276 1314 1265 1262 1261 1314 1256 1207 1289 ]
C [ 1050 1067 1066 1092 1071 1022 1023 1003 1045 970 1066 1115 1028 1063 1087 1067 990 1112 1035 906 836 512 524 14 15 3 983 367 7 4756 0 1067 2467 1163 1170 1199 1072 1069 1101 1098 1010 1129 1089 1163 1153 1018 1096 1137 1137 1161 ]
G [ 1109 978 1157 1165 1095 1233 1174 1138 1110 1162 1080 999 1052 1068 1123 1163 1234 1118 1123 1234 1290 2293 1317 10 4667 17 1023 4311 0 12 2 323 551 891 1050 1147 1199 1091 1205 1146 1148 1157 1144 1133 992 1161 1139 1067 1075 1062 ]
T [ 1410 1485 1351 1220 1275 1239 1228 1371 1367 1412 1334 1310 1479 1453 1204 1165 1245 1289 1272 1142 1332 690 82 4791 129 39 2616 32 4739 23 0 3413 1056 1277 1563 1402 1314 1431 1322 1281 1236 1262 1277 1263 1417 1384 1275 1364 1405 1312 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.00 0.00 0.05 -0.06 -0.07 0.09 -0.05 0.02 0.00 0.06 0.12 -0.06 0.00 0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.00 0.00 -0.06 -0.06 0.10 0.00 0.01 0.09 -0.07 0.03 0.04 0.01 0.02 0.01 ]
G [ 0.01 0.02 0.01 0.04 0.03 -0.06 0.10 0.00 -0.01 0.09 -0.08 -0.06 0.00 -0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 0.00 -0.00 -0.06 0.10 0.05 -0.01 0.02 -0.05 0.09 -0.07 -0.06 0.06 -0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11601

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 10937

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1696

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 203

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 81

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 35

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
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