Detailed information of deep learning profile BP000843.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000843.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR402ZCY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 0.06 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 0.04 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.00 0.04 0.00 -0.00 0.03 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.05 0.00 -0.00 0.00 -0.00 0.04 -0.00 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 287 303 282 298 286 299 290 325 282 368 271 281 253 245 278 300 334 316 248 245 606 3 1 1250 66 70 27 8 1295 16 115 279 220 267 244 311 307 272 307 367 250 250 281 300 293 315 283 274 295 271 ]
C [ 359 361 356 356 352 353 327 320 400 339 309 328 430 399 344 330 357 300 338 191 260 2 1 3 344 81 4 1285 1 462 786 359 414 356 378 368 347 347 336 348 361 331 382 375 330 364 368 347 365 341 ]
G [ 377 354 334 357 371 372 365 394 355 322 343 332 329 315 355 374 373 416 482 740 413 2 1248 12 422 1141 0 2 1 170 131 361 342 346 377 319 378 392 371 322 336 401 320 350 360 337 351 377 335 360 ]
T [ 274 279 325 286 288 273 315 258 260 268 374 356 285 338 320 293 233 265 229 121 18 1290 47 32 465 5 1266 2 0 649 265 298 321 328 298 299 265 286 283 260 350 315 314 272 314 281 295 299 302 325 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.00 0.02 -0.03 -0.02 0.04 -0.01 0.01 0.01 0.03 0.06 -0.03 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.01 0.00 -0.03 -0.03 0.04 0.01 0.00 0.04 -0.02 0.02 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.02 -0.02 0.04 -0.00 0.00 0.03 -0.03 -0.03 0.00 0.01 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.03 0.05 0.03 0.01 0.01 -0.01 0.04 -0.03 -0.03 0.02 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4011

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1169

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 619

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 315

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 159

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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