Detailed information of deep learning profile BP000835.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000835.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BJY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.02 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 0.03 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.02 0.00 0.00 0.04 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.02 0.00 0.00 0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 126 109 125 133 128 110 116 119 142 135 115 118 123 121 69 46 69 26 30 42 106 104 147 102 126 181 365 42 43 506 17 32 64 205 427 102 159 136 154 114 112 117 89 83 99 124 86 106 127 128 ]
C [ 241 260 239 238 235 265 262 260 268 215 262 251 210 227 407 86 95 640 37 617 192 318 241 280 224 104 60 72 52 46 654 28 168 384 98 286 226 220 214 257 233 249 248 299 254 280 287 268 228 234 ]
G [ 218 249 228 226 244 225 223 208 189 256 241 203 266 277 143 548 439 44 646 40 335 195 230 229 134 303 241 55 555 129 31 644 65 89 130 178 224 270 248 247 281 254 299 232 283 217 243 249 247 233 ]
T [ 146 113 139 134 124 131 130 144 132 125 113 159 132 106 112 51 128 21 18 32 98 114 113 120 247 143 65 562 81 50 29 27 434 53 76 165 122 105 115 113 105 111 95 117 95 110 115 108 129 136 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 -0.02 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 0.00 0.00 0.01 -0.01 -0.01 0.02 -0.02 -0.00 -0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.01 -0.01 -0.00 0.03 -0.01 0.02 0.01 0.00 0.00 0.01 -0.00 -0.01 -0.01 0.00 -0.01 -0.02 0.04 -0.03 0.00 0.01 -0.01 0.00 -0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.01 0.02 0.01 -0.01 0.03 -0.01 0.01 0.00 -0.00 0.00 -0.00 0.00 0.01 -0.02 0.02 0.00 -0.03 0.04 -0.01 -0.01 -0.00 -0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.01 -0.00 -0.01 -0.02 -0.00 -0.01 -0.01 -0.00 -0.01 0.01 -0.00 -0.01 0.02 -0.00 -0.00 -0.01 -0.02 0.02 -0.01 -0.01 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2345

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 839

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 447

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 188

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 168

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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