Detailed information of deep learning profile BP000842.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000842.1
Cell line/tissue: liver
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR205FOW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.01 0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.03 0.00 -0.00 0.03 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.04 0.00 0.00 0.01 -0.00 0.02 0.00 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 143 135 143 146 137 156 151 145 142 154 160 144 129 129 142 137 154 153 199 118 102 329 0 0 575 2 4 112 1 575 1 111 148 99 129 102 137 135 141 145 137 128 129 158 164 142 132 143 138 138 ]
C [ 154 130 138 160 140 127 137 133 140 152 135 145 165 177 153 152 144 136 133 132 50 63 0 0 0 107 27 8 574 0 210 276 142 161 138 150 142 153 144 131 142 132 156 133 155 150 173 160 134 137 ]
G [ 122 159 162 119 157 146 152 152 168 136 151 136 119 131 144 180 138 181 142 195 383 183 0 574 0 76 542 0 0 0 81 66 154 144 152 174 141 165 135 141 147 152 133 128 124 123 141 144 175 151 ]
T [ 156 151 132 150 141 146 135 145 125 133 129 150 162 138 136 106 139 105 101 130 40 0 575 1 0 390 2 455 0 0 283 122 131 171 156 149 155 122 155 158 149 163 157 156 132 160 129 128 128 149 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 0.00 0.01 -0.02 -0.02 0.03 -0.02 -0.00 0.01 0.03 0.04 -0.02 0.00 0.00 -0.01 -0.00 ]
C [ 0.00 0.01 0.01 0.00 0.01 -0.00 -0.02 -0.02 0.03 -0.00 0.01 0.02 -0.02 0.01 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.01 -0.02 0.03 0.00 -0.00 0.03 -0.03 -0.03 -0.01 0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.02 0.04 0.02 -0.00 0.01 -0.01 0.02 -0.03 -0.02 0.01 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 308

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 88

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 55

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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