Detailed information of deep learning profile BP000841.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000841.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR028UIU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.04 -0.00 0.00 0.08 -0.00 0.01 0.00 0.00 0.09 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.07 -0.00 0.00 0.08 0.00 0.01 0.02 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 0.00 0.00 0.08 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.11 0.00 0.00 0.00 0.00 0.08 -0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1291 1342 1391 1402 1319 1307 1378 1274 1292 1261 1301 1301 1295 1420 1326 1484 1487 1268 1073 3351 1 8 4624 62 2675 103 201 4606 133 719 1372 1154 1261 1257 1173 1257 1260 1434 1437 1327 1347 1317 1298 1317 1294 1286 1294 1217 1333 1436 ]
C [ 1018 1040 981 1029 1058 1072 964 1074 1125 1086 1034 1074 1137 963 1165 1056 999 825 532 321 7 10 3 4118 1022 80 4488 26 1232 2224 1206 1184 1088 1132 1102 1086 1103 1016 1051 962 1000 1115 1072 1078 1064 1107 1056 1116 1132 959 ]
G [ 1087 1100 1118 1079 1005 1006 1067 1100 980 1062 944 1093 1063 1041 1005 1104 1145 1098 2249 1007 2 4591 52 408 755 41 18 34 576 533 846 884 1038 984 934 979 1007 996 1000 1075 1044 1012 1058 993 987 1017 1079 1053 993 1039 ]
T [ 1321 1235 1227 1207 1335 1332 1308 1269 1320 1308 1438 1249 1222 1293 1221 1073 1086 1526 863 38 4707 108 38 129 265 4493 10 51 2776 1241 1293 1495 1330 1344 1508 1395 1347 1271 1229 1353 1326 1273 1289 1329 1372 1307 1288 1331 1259 1283 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.00 -0.00 0.05 -0.05 -0.05 0.08 -0.03 0.02 -0.00 0.04 0.09 -0.05 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.00 0.00 -0.04 -0.06 0.08 -0.00 0.01 0.08 -0.05 0.03 0.04 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.04 0.03 -0.05 0.08 0.01 0.01 0.09 -0.05 -0.04 0.00 0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.01 0.01 0.00 -0.05 0.11 0.05 0.01 0.02 -0.04 0.08 -0.05 -0.05 0.05 -0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 8898

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 8278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1932

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 786

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 70

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 27

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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