Detailed information of deep learning profile BP000840.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000840.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000DOG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.04 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.01 0.00 0.00 0.04 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 -0.00 0.02 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 109 94 78 80 90 78 77 70 77 84 99 66 75 95 135 47 37 371 8 18 27 63 450 34 93 170 61 83 91 83 41 37 25 122 42 80 77 99 96 83 100 92 116 113 107 98 75 116 101 101 ]
C [ 183 195 183 195 187 200 184 232 220 216 181 228 206 161 136 140 89 16 547 12 93 430 34 176 281 112 176 201 211 259 61 436 71 302 380 133 212 208 171 184 190 152 146 174 172 176 186 169 201 178 ]
G [ 196 186 219 227 202 211 231 190 193 190 205 168 185 206 232 84 294 151 8 536 25 59 65 72 75 189 240 197 202 174 432 67 454 81 112 296 204 170 222 200 182 225 227 203 201 198 207 187 181 201 ]
T [ 86 99 94 72 95 85 82 82 84 84 89 112 108 112 71 303 154 36 11 8 429 22 25 292 125 103 97 93 70 58 40 34 24 69 40 65 81 97 85 107 102 105 85 84 94 102 106 102 91 94 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 0.00 -0.02 -0.02 0.02 -0.02 -0.01 -0.01 -0.00 0.02 -0.02 -0.01 -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.01 ]
C [ 0.00 0.01 0.00 0.01 0.01 -0.00 0.00 0.01 0.00 0.00 -0.01 0.00 0.00 -0.02 0.04 -0.02 -0.00 0.01 -0.02 0.01 0.01 -0.00 0.00 -0.00 0.00 0.01 -0.01 0.02 -0.01 0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 -0.01 0.01 0.00 -0.02 0.04 -0.02 0.00 0.01 -0.01 0.00 0.00 0.01 0.01 -0.00 0.00 0.01 -0.01 0.02 -0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 ]
T [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.02 0.01 -0.00 -0.01 -0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.00 -0.01 -0.01 -0.00 -0.01 -0.01 -0.00 -0.01 -0.00 -0.01 -0.01 -0.00 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 742

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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