Detailed information of deep learning profile BP000838.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000838.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BNU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 0.04 0.00 0.00 -0.00 0.01 0.02 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.04 -0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.00 0.03 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.04 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 497 464 496 459 480 471 467 490 474 488 482 444 443 465 425 377 396 348 355 367 429 423 424 409 587 624 977 2 25 2417 2 36 193 1123 1655 294 538 509 479 471 495 411 391 374 455 462 417 459 465 471 ]
C [ 795 766 795 780 797 801 785 773 806 732 764 814 760 810 857 699 670 1062 677 1100 843 886 700 780 738 361 348 19 35 5 2470 26 1059 1023 261 829 955 716 798 806 743 825 688 896 759 879 878 814 767 789 ]
G [ 717 810 715 780 756 758 776 745 739 803 799 763 825 782 754 1032 1003 680 1099 669 838 784 968 917 582 1168 1127 5 2320 46 9 2397 58 260 346 742 566 871 745 792 842 827 957 795 877 686 758 797 812 740 ]
T [ 486 455 489 476 462 465 467 487 476 472 450 474 467 438 459 387 426 405 364 359 385 402 403 389 588 342 43 2469 115 27 14 36 1185 89 233 630 436 399 473 426 415 432 459 430 404 468 442 425 451 495 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.02 -0.02 -0.01 0.04 -0.03 0.01 0.00 0.02 0.03 -0.01 0.00 0.00 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.00 0.00 0.01 -0.00 -0.03 0.04 -0.01 0.02 0.01 -0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 -0.02 0.03 0.01 -0.01 0.04 -0.03 0.00 0.00 0.00 0.00 0.01 0.01 0.01 ]
T [ 0.00 -0.00 0.00 0.00 -0.02 0.04 0.01 0.00 0.01 -0.01 0.03 -0.01 -0.00 0.01 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3407

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2185

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1867

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1601

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 747

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 559

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 352

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 255

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 221

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 140

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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