Detailed information of deep learning profile BP000837.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000837.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BKE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 0.03 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 0.02 -0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 0.01 -0.00 0.04 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 0.00 0.00 0.02 -0.00 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 137 131 115 119 110 108 96 102 112 102 127 134 120 141 214 69 44 395 6 7 23 31 743 29 99 201 112 109 86 99 66 72 76 112 91 88 122 128 119 114 124 139 141 127 120 124 136 137 137 149 ]
C [ 238 274 244 231 216 318 252 353 256 275 273 257 258 184 197 102 66 40 759 2 22 718 7 342 342 179 256 334 252 287 197 455 177 384 417 254 272 271 249 246 282 231 235 257 246 260 251 242 252 222 ]
G [ 267 252 288 330 315 238 333 215 296 266 257 249 240 260 241 87 346 281 1 764 13 17 16 98 137 213 285 204 317 286 439 178 448 188 195 332 246 240 267 274 227 290 259 270 293 257 245 256 252 262 ]
T [ 131 116 126 93 132 109 92 103 109 130 116 133 155 188 121 515 317 57 7 0 715 7 7 304 195 180 120 126 118 101 71 68 72 89 70 99 133 134 138 139 140 113 138 119 114 132 141 138 132 140 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 -0.01 -0.01 0.01 -0.02 0.00 -0.00 -0.00 0.03 -0.01 -0.00 0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.01 ]
C [ 0.01 0.01 0.00 -0.00 0.00 -0.00 -0.02 0.04 -0.02 -0.00 0.02 -0.02 0.01 0.01 0.00 0.00 0.00 0.01 0.01 -0.00 0.02 -0.00 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.01 0.01 0.01 -0.02 0.04 -0.01 -0.01 0.01 -0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 -0.00 0.02 0.00 -0.00 0.01 0.00 ]
T [ -0.01 -0.00 -0.00 -0.00 0.02 0.01 -0.01 -0.00 -0.03 0.02 -0.01 -0.02 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1879

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 768

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 648

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 431

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 299

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 51

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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