Detailed information of deep learning profile BP000837.1

  1. Home
  2. Deep Learning Profile > BP000837.1
This page shows detailed deep learning-derived predictions and motifs for ATF3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000837.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BKE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 -0.00 0.02 0.00 0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.04 -0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 -0.00 0.02 0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.03 0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 140 132 138 141 132 114 119 138 113 140 139 138 134 133 99 70 89 72 68 71 101 118 126 120 180 195 304 7 7 715 0 7 57 317 515 121 188 155 133 116 130 109 103 92 109 132 93 126 116 131 ]
C [ 262 252 256 245 257 293 270 259 290 227 274 267 240 246 332 195 188 448 178 439 286 317 204 285 213 137 98 16 17 13 764 1 281 346 87 241 260 240 249 257 266 296 215 333 238 315 330 288 252 267 ]
G [ 222 252 242 251 260 246 257 235 231 282 246 249 271 272 254 417 384 177 455 197 287 252 334 256 179 342 342 7 718 22 2 759 40 66 102 197 184 258 257 273 275 256 353 252 318 216 231 244 274 238 ]
T [ 149 137 137 136 124 120 127 141 139 124 114 119 128 122 88 91 112 76 72 66 99 86 109 112 201 99 29 743 31 23 7 6 395 44 69 214 141 120 134 127 102 112 102 96 108 110 119 115 131 137 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 0.00 0.00 0.01 -0.02 -0.01 0.02 -0.03 -0.00 -0.01 0.01 0.02 -0.00 -0.00 -0.00 -0.01 ]
C [ 0.00 0.01 -0.00 0.00 0.02 -0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 -0.01 0.01 -0.01 -0.01 0.04 -0.02 0.01 0.01 -0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.00 0.02 -0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.00 0.00 -0.00 0.00 0.01 0.01 ]
T [ -0.01 -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 0.00 -0.00 -0.01 0.03 -0.00 -0.00 0.00 -0.02 0.01 -0.01 -0.01 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1879

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 768

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 648

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 431

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 299

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 51

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
  • 1 (current)