Detailed information of deep learning profile BP000836.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000836.1
Cell line/tissue: H1
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BKC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.05 -0.00 0.00 0.03 -0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 0.01 -0.00 0.05 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.02 0.01 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 164 166 151 147 138 130 126 134 133 141 145 165 143 161 262 81 55 578 3 12 44 28 937 30 156 241 145 143 147 142 93 107 116 165 116 138 157 166 163 171 174 167 177 149 175 155 165 172 169 190 ]
C [ 305 348 324 287 296 378 313 418 359 349 331 357 328 256 225 111 94 25 944 6 14 926 13 444 411 203 356 401 315 345 248 524 247 447 461 316 343 338 296 323 315 304 282 313 311 321 297 306 337 290 ]
G [ 326 293 337 422 374 324 402 284 360 328 324 281 332 329 332 105 419 332 6 955 29 11 15 135 145 305 329 278 387 356 532 254 510 240 267 402 308 309 334 328 314 343 330 357 337 336 329 312 303 331 ]
T [ 178 166 161 117 165 141 132 137 121 155 173 170 170 227 154 676 405 38 20 0 886 8 8 364 261 224 143 151 124 130 100 88 100 121 129 117 165 160 180 151 170 159 184 154 150 161 182 183 164 162 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 0.01 -0.00 -0.01 0.02 -0.02 0.01 -0.00 -0.00 0.03 -0.02 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 ]
C [ 0.01 0.00 0.00 -0.00 -0.01 -0.01 -0.03 0.05 -0.02 -0.00 0.03 -0.02 0.01 0.01 0.00 0.01 0.00 0.01 0.01 -0.00 0.02 -0.00 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.01 0.02 -0.03 0.05 -0.02 -0.02 0.01 -0.01 -0.00 0.00 0.01 0.01 0.00 0.01 0.02 -0.00 0.01 0.00 -0.00 0.01 0.00 ]
T [ -0.01 -0.00 -0.00 -0.01 0.03 0.02 -0.01 -0.01 -0.04 0.03 -0.02 -0.02 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.02 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2467

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1889

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 844

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 409

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 295

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 48

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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