Detailed information of deep learning profile BP000836.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000836.1
Cell line/tissue: H1
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BKC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 0.03 0.00 -0.00 -0.00 0.01 0.02 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.05 -0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 -0.00 0.03 0.00 -0.00 0.05 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 162 164 183 182 161 150 154 184 159 170 151 180 160 165 117 129 121 100 88 100 130 124 151 143 224 261 364 8 8 886 0 20 38 405 676 154 227 170 170 173 155 121 137 132 141 165 117 161 166 178 ]
C [ 331 303 312 329 336 337 357 330 343 314 328 334 309 308 402 267 240 510 254 532 356 387 278 329 305 145 135 15 11 29 955 6 332 419 105 332 329 332 281 324 328 360 284 402 324 374 422 337 293 326 ]
G [ 290 337 306 297 321 311 313 282 304 315 323 296 338 343 316 461 447 247 524 248 345 315 401 356 203 411 444 13 926 14 6 944 25 94 111 225 256 328 357 331 349 359 418 313 378 296 287 324 348 305 ]
T [ 190 169 172 165 155 175 149 177 167 174 171 163 166 157 138 116 165 116 107 93 142 147 143 145 241 156 30 937 28 44 12 3 578 55 81 262 161 143 165 145 141 133 134 126 130 138 147 151 166 164 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 -0.02 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.02 -0.02 -0.02 0.03 -0.04 -0.01 -0.01 0.02 0.03 -0.01 -0.00 -0.00 -0.01 ]
C [ 0.00 0.01 -0.00 0.00 0.01 -0.00 0.02 0.01 0.00 0.01 0.01 0.00 -0.00 -0.01 0.01 -0.02 -0.02 0.05 -0.03 0.02 0.01 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.00 0.02 -0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 -0.02 0.03 -0.00 -0.02 0.05 -0.03 -0.01 -0.01 -0.00 0.00 0.00 0.01 ]
T [ -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.02 0.03 -0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.00 0.01 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2467

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1889

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 844

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 409

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 295

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 48

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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