Detailed information of deep learning profile BP000834.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000834.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR664POU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.02 0.02 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.03 0.04 0.03 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.03 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1478 1479 1434 1468 1456 1462 1468 1392 1486 1424 1385 1450 1446 1412 1512 1318 1296 1127 1041 551 446 4086 5176 4404 880 330 593 20 142 1284 1542 1347 1253 1278 1276 1303 1258 1237 1420 1406 1403 1528 1421 1340 1409 1403 1389 1421 1383 1441 ]
C [ 1464 1470 1503 1543 1556 1549 1503 1441 1480 1476 1517 1482 1514 1540 1442 1641 1739 1766 852 135 26 166 258 193 758 3077 5225 5810 5576 1835 1118 1696 1697 1690 1633 1590 1713 1772 1699 1612 1595 1503 1497 1564 1550 1596 1585 1476 1592 1519 ]
G [ 1469 1526 1441 1390 1353 1440 1446 1571 1480 1537 1521 1450 1533 1624 1558 1598 1324 1218 1949 4928 5243 1379 250 178 1547 134 1 3 79 595 1477 1523 1408 1368 1455 1403 1392 1377 1374 1401 1444 1490 1467 1521 1495 1468 1485 1492 1412 1424 ]
T [ 1422 1358 1455 1432 1468 1382 1416 1429 1387 1396 1410 1451 1340 1257 1321 1276 1474 1722 1991 219 118 202 149 1058 2648 2292 14 0 36 2119 1696 1267 1475 1497 1469 1537 1470 1447 1340 1414 1391 1312 1448 1408 1379 1366 1374 1444 1446 1449 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 0.02 0.03 0.02 -0.00 -0.01 0.00 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.01 -0.02 -0.01 -0.01 -0.01 -0.00 0.02 0.03 0.04 0.03 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.03 0.03 0.01 -0.00 -0.01 -0.00 -0.02 -0.02 -0.01 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 0.01 0.02 0.01 -0.01 -0.02 -0.01 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1067

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 463

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 30

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
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