Detailed information of deep learning profile BP000828.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM15510 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000828.1
Cell line/tissue: GM15510
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.05 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.06 0.07 0.04 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.05 0.06 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1264 1260 1254 1325 1299 1256 1335 1307 1274 1355 1283 1297 1274 1258 1316 1249 1220 1329 1116 1158 1053 761 409 420 3692 4933 4180 769 261 560 25 443 1302 1395 1174 1198 1120 1136 1135 1146 1155 1258 1218 1223 1244 1231 1223 1255 1276 1202 ]
C [ 1308 1243 1295 1274 1285 1319 1315 1359 1380 1283 1246 1205 1258 1324 1314 1333 1389 1226 1496 1591 1374 555 91 17 104 114 159 839 2903 4569 5112 4409 1334 1009 1502 1401 1454 1520 1508 1508 1583 1525 1407 1353 1390 1320 1361 1379 1496 1423 ]
G [ 1357 1354 1375 1332 1352 1315 1273 1276 1285 1292 1406 1448 1420 1443 1350 1443 1463 1470 1430 1108 1163 2412 4544 4676 1298 84 228 1415 154 5 15 156 759 1488 1492 1280 1299 1233 1170 1213 1197 1199 1272 1318 1297 1316 1334 1324 1249 1254 ]
T [ 1235 1307 1240 1233 1228 1274 1241 1222 1225 1234 1229 1214 1212 1139 1184 1139 1092 1139 1122 1307 1574 1436 120 51 70 33 597 2141 1846 30 12 156 1769 1272 996 1285 1291 1275 1351 1297 1229 1182 1267 1270 1233 1297 1246 1206 1143 1285 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.01 -0.02 -0.02 -0.00 0.03 0.05 0.04 -0.00 -0.01 0.01 -0.02 -0.01 -0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.02 -0.01 -0.04 -0.02 -0.01 -0.02 0.01 0.03 0.06 0.07 0.05 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 0.06 0.06 0.02 -0.01 -0.02 0.00 -0.02 -0.04 -0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.02 -0.01 -0.02 -0.02 0.01 0.03 0.02 -0.03 -0.03 -0.03 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1298

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 828

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 639

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 65

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
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