Detailed information of deep learning profile BP000826.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM12891 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000826.1
Cell line/tissue: GM12891
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.06 0.10 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.04 0.06 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2247 2104 2231 2133 2153 2222 2266 2073 2232 2136 2111 2203 2255 2304 2246 2203 2227 1905 2400 3097 207 8 59 3171 3655 1188 135 224 195 323 2629 2530 2305 1978 2009 1948 2053 2008 2072 2071 2158 2229 2242 2104 2202 2218 2240 2102 2232 2093 ]
C [ 1886 1958 1924 1987 2025 2016 1993 1995 1950 1893 1843 1823 1889 1878 1920 1941 1978 2205 2019 827 129 10 16 182 2229 312 213 1662 7032 6795 3253 1855 1750 2144 2164 2178 2155 2123 2096 2136 2084 2095 1932 1977 1857 1906 1943 2087 2006 2091 ]
G [ 2097 2152 2184 2226 2084 2132 2037 2060 2072 2203 2299 2411 2314 2232 2211 2219 2170 2168 1532 2301 7575 8349 7358 4484 1216 256 222 195 85 296 1035 2253 2385 2345 1915 2081 2020 1966 1887 1893 1877 1938 1956 2070 2060 2034 1983 2006 1872 1914 ]
T [ 2194 2210 2085 2078 2162 2054 2128 2296 2170 2192 2171 1987 1966 2010 2047 2061 2049 2146 2473 2199 513 57 991 587 1324 6668 7854 6343 1112 1010 1507 1786 1984 1957 2336 2217 2196 2327 2369 2324 2305 2162 2294 2273 2305 2266 2258 2229 2314 2326 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.03 -0.05 -0.03 0.03 0.03 0.02 -0.03 -0.03 -0.02 -0.02 -0.00 0.00 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.00 -0.03 -0.06 -0.05 -0.01 -0.03 -0.01 0.02 0.07 0.07 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.07 0.10 0.08 0.04 -0.00 -0.03 -0.02 -0.04 -0.05 -0.02 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.00 0.05 0.07 0.04 -0.00 -0.02 -0.02 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1174

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1090

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 233

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
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