Detailed information of deep learning profile BP000833.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000833.1
Cell line/tissue: HepG2
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR580HOI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.03 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.03 0.03 0.02 0.00 -0.00 0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 0.01 0.03 0.03 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 241 222 226 225 245 214 274 215 230 254 215 238 246 281 308 205 237 214 130 10 25 790 1018 881 193 69 53 24 151 255 241 213 161 175 194 220 231 252 263 272 244 231 223 225 247 227 231 239 246 224 ]
C [ 302 296 298 305 276 291 262 262 288 278 347 319 303 285 285 327 364 336 89 5 33 11 30 36 154 469 945 1022 797 213 213 335 312 329 336 311 320 312 290 285 278 291 283 293 290 284 312 288 285 313 ]
G [ 320 304 310 302 313 352 292 295 288 302 286 292 322 292 291 280 217 219 589 1037 988 250 11 50 232 46 14 12 70 309 396 330 301 251 307 286 282 269 304 273 303 313 311 311 300 314 297 299 315 290 ]
T [ 206 247 235 237 235 212 241 297 263 235 221 220 198 211 185 257 251 300 261 17 23 18 10 102 490 485 57 11 51 292 219 191 295 314 232 252 236 236 212 239 244 234 252 240 232 244 229 243 223 242 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 -0.01 -0.02 -0.01 0.02 0.03 0.02 0.00 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.00 -0.00 -0.01 -0.02 -0.00 -0.01 -0.01 0.01 0.03 0.03 0.02 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.03 0.03 0.01 -0.01 -0.01 -0.00 -0.02 -0.01 -0.00 0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 0.01 0.02 0.02 -0.00 -0.02 -0.01 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 821

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 481

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 289

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 253

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 109

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
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