Detailed information of deep learning profile BP000827.1

This page shows detailed deep learning-derived predictions and motifs for RELA in GM12892 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000827.1
Cell line/tissue: GM12892
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.05 0.08 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.04 0.05 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 1163 1123 1119 1156 1227 1122 1161 1116 1128 1155 1189 1274 1195 1240 1242 971 1165 1695 134 4 24 1763 1949 585 44 123 53 115 1450 1396 1238 1068 1052 1045 1046 1122 1108 1101 1138 1188 1154 1115 1190 1149 1146 1150 1150 1110 1192 1129 ]
C [ 1173 1201 1255 1195 1188 1196 1191 1195 1136 1118 1131 1105 1214 1163 1163 1295 1286 683 128 6 7 150 1324 165 90 1208 4616 4344 2055 1149 1106 1290 1323 1327 1323 1214 1265 1276 1246 1228 1176 1154 1136 1127 1148 1230 1187 1246 1216 1177 ]
G [ 1263 1280 1219 1259 1150 1212 1211 1238 1286 1377 1357 1281 1283 1256 1249 1316 958 1106 4114 4701 4145 2539 745 146 75 102 7 28 508 1288 1370 1346 1175 1242 1176 1162 1249 1151 1156 1172 1225 1238 1245 1273 1220 1203 1129 1165 1154 1180 ]
T [ 1143 1138 1149 1132 1177 1212 1179 1193 1192 1092 1065 1082 1050 1083 1088 1160 1333 1258 366 31 566 290 724 3846 4533 3309 66 255 729 909 1028 1038 1192 1128 1197 1244 1120 1214 1202 1154 1187 1235 1171 1193 1228 1159 1276 1221 1180 1256 ]

Hypothetical CWM

A [ 0.00 0.00 0.00 0.00 -0.02 -0.04 -0.02 0.03 0.03 0.02 -0.02 -0.02 -0.01 -0.02 -0.01 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.00 -0.02 -0.05 -0.04 -0.00 -0.02 -0.01 0.03 0.06 0.06 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.05 0.08 0.07 0.04 -0.00 -0.02 -0.02 -0.03 -0.05 -0.02 0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.01 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 0.04 0.06 0.04 -0.00 -0.02 -0.01 -0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 646

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 588

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 386

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 23

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
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