Detailed information of deep learning profile BP000832.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM19193 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000832.1
Cell line/tissue: GM19193
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EBM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.07 0.06 0.02 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 0.10 0.07 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.05 0.07 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1222 1223 1192 1172 1116 1170 1190 1247 1166 1205 1168 1127 1165 1234 1262 1218 1243 1266 1071 1297 1628 116 2 22 1790 1982 525 28 83 89 217 1506 1446 1252 1036 1090 1093 1102 1122 1146 1156 1127 1186 1189 1158 1198 1175 1196 1121 1227 ]
C [ 1157 1134 1219 1194 1170 1210 1248 1243 1206 1180 1166 1124 1099 1169 1147 1155 1194 1192 1283 1293 582 100 8 9 150 1279 136 80 1215 4307 4042 2004 1067 1023 1277 1298 1298 1258 1236 1239 1251 1243 1237 1166 1137 1164 1144 1184 1241 1189 ]
G [ 1229 1257 1217 1291 1320 1278 1275 1143 1199 1269 1344 1385 1431 1363 1324 1354 1287 1280 1358 882 1435 4274 4776 4211 2598 750 137 139 114 39 126 602 1366 1510 1388 1176 1242 1255 1203 1189 1148 1187 1166 1209 1290 1246 1244 1231 1220 1140 ]
T [ 1223 1217 1203 1174 1225 1173 1118 1198 1260 1177 1153 1195 1136 1065 1098 1104 1107 1093 1119 1359 1186 341 45 589 293 820 4033 4584 3419 396 446 719 952 1046 1130 1267 1198 1216 1270 1257 1276 1274 1242 1267 1246 1223 1268 1220 1249 1275 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 -0.04 -0.07 -0.04 0.03 0.03 0.00 -0.04 -0.03 -0.01 -0.02 -0.01 -0.00 -0.00 -0.01 -0.01 ]
C [ 0.01 0.01 0.01 0.01 -0.00 -0.03 -0.06 -0.05 -0.01 -0.03 -0.02 0.02 0.07 0.07 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.07 0.10 0.08 0.04 -0.00 -0.03 -0.02 -0.05 -0.05 -0.02 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.00 0.00 -0.01 -0.02 -0.01 0.01 -0.02 -0.01 0.05 0.07 0.04 -0.01 -0.03 -0.02 -0.01 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 788

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 67

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 27

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 24

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
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