Detailed information of deep learning profile BP000825.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000825.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.07 0.05 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.06 0.09 0.06 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1620 1561 1506 1525 1613 1531 1517 1556 1479 1640 1602 1503 1538 1566 1518 1685 1369 1383 1142 1033 420 67 4830 5675 5471 782 411 1075 23 128 1504 1726 1520 1490 1361 1388 1397 1311 1377 1511 1484 1513 1564 1528 1450 1530 1434 1482 1519 1510 ]
C [ 1292 1297 1357 1411 1377 1384 1454 1375 1394 1274 1300 1388 1406 1357 1460 1297 1587 1515 1576 602 47 3 125 31 69 1016 2826 4672 5755 5575 1321 1008 1461 1386 1483 1491 1442 1625 1660 1518 1497 1441 1428 1329 1504 1387 1536 1438 1396 1457 ]
G [ 1350 1363 1406 1356 1268 1305 1356 1368 1398 1352 1439 1442 1423 1469 1478 1496 1489 1262 1279 1948 5144 5646 724 68 85 2038 103 2 4 38 466 1497 1496 1349 1349 1348 1303 1289 1278 1300 1349 1336 1362 1380 1330 1368 1391 1349 1356 1290 ]
T [ 1522 1563 1515 1492 1526 1564 1457 1485 1513 1518 1443 1451 1417 1392 1328 1306 1339 1624 1787 2201 173 68 105 10 159 1948 2444 35 2 43 2493 1553 1307 1559 1591 1557 1642 1559 1469 1455 1454 1494 1430 1547 1500 1499 1423 1515 1513 1527 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.01 -0.02 -0.02 -0.00 0.04 0.07 0.05 -0.00 -0.01 0.02 -0.01 -0.01 -0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.01 -0.06 -0.04 -0.03 -0.03 0.01 0.04 0.07 0.09 0.07 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 0.06 0.07 0.02 -0.01 -0.02 0.00 -0.04 -0.06 -0.03 -0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 -0.02 -0.01 -0.02 -0.02 0.01 0.03 0.03 -0.03 -0.04 -0.03 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3026

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2635

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1958

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1699

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1672

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 39

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 27

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
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