Detailed information of deep learning profile BP000834.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000834.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR664POU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.03 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.03 0.04 0.03 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.02 0.02 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1449 1446 1444 1374 1366 1379 1408 1448 1312 1391 1414 1340 1447 1470 1537 1469 1497 1475 1267 1696 2119 36 0 14 2292 2648 1058 149 202 118 219 1991 1722 1474 1276 1321 1257 1340 1451 1410 1396 1387 1429 1416 1382 1468 1432 1455 1358 1422 ]
C [ 1424 1412 1492 1485 1468 1495 1521 1467 1490 1444 1401 1374 1377 1392 1403 1455 1368 1408 1523 1477 595 79 3 1 134 1547 178 250 1379 5243 4928 1949 1218 1324 1598 1558 1624 1533 1450 1521 1537 1480 1571 1446 1440 1353 1390 1441 1526 1469 ]
G [ 1519 1592 1476 1585 1596 1550 1564 1497 1503 1595 1612 1699 1772 1713 1590 1633 1690 1697 1696 1118 1835 5576 5810 5225 3077 758 193 258 166 26 135 852 1766 1739 1641 1442 1540 1514 1482 1517 1476 1480 1441 1503 1549 1556 1543 1503 1470 1464 ]
T [ 1441 1383 1421 1389 1403 1409 1340 1421 1528 1403 1406 1420 1237 1258 1303 1276 1278 1253 1347 1542 1284 142 20 593 330 880 4404 5176 4086 446 551 1041 1127 1296 1318 1512 1412 1446 1450 1385 1424 1486 1392 1468 1462 1456 1468 1434 1479 1478 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 -0.01 -0.02 -0.01 0.01 0.02 0.01 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.01 -0.02 -0.02 -0.00 -0.01 -0.00 0.01 0.03 0.03 0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 0.04 0.03 0.02 -0.00 -0.01 -0.01 -0.01 -0.02 -0.01 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.00 -0.01 -0.00 0.02 0.03 0.02 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1067

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 463

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 30

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
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