Detailed information of deep learning profile BP000831.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM19099 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000831.1
Cell line/tissue: GM19099
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EBI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.00 -0.00 0.01 0.08 0.07 0.02 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.07 0.11 0.08 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.09 0.04 0.00 -0.00 -0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 670 713 632 692 635 664 626 680 612 696 665 645 643 694 724 639 680 673 593 724 915 72 5 24 939 1155 300 14 47 74 126 838 804 717 548 579 601 601 628 628 648 654 655 659 636 670 636 661 626 681 ]
C [ 686 659 723 678 694 684 701 712 703 691 678 669 628 670 644 697 705 727 758 693 369 85 20 13 101 712 106 42 558 2361 2276 1088 620 592 790 756 762 751 740 691 728 731 738 694 695 653 664 665 748 682 ]
G [ 700 691 670 732 734 715 737 668 698 722 760 772 833 771 772 833 739 715 732 539 762 2352 2658 2440 1511 420 116 65 51 27 64 366 789 831 765 680 732 689 657 698 630 645 651 689 714 741 725 701 690 665 ]
T [ 661 654 692 615 654 654 653 657 704 608 614 631 613 582 577 548 593 602 634 761 671 208 34 240 166 430 2195 2596 2061 255 251 425 504 577 614 702 622 676 692 700 711 687 673 675 672 653 692 690 653 689 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.05 -0.08 -0.04 0.03 0.04 0.01 -0.04 -0.03 -0.03 -0.03 -0.02 0.00 0.00 -0.01 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.02 -0.06 -0.06 -0.02 -0.04 -0.03 0.03 0.08 0.08 0.04 0.02 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.08 0.11 0.09 0.05 -0.01 -0.03 -0.03 -0.06 -0.07 -0.02 0.02 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.00 0.00 -0.01 -0.03 -0.02 -0.00 -0.03 -0.01 0.06 0.09 0.06 -0.00 -0.04 -0.03 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 29

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 24

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
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