Detailed information of deep learning profile BP000831.1

  1. Home
  2. Deep Learning Profile > BP000831.1
This page shows detailed deep learning-derived predictions and motifs for RELA in GM19099 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000831.1
Cell line/tissue: GM19099
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EBI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.01 -0.00 0.00 0.04 0.09 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.08 0.11 0.07 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 0.07 0.08 0.01 -0.00 -0.00 -0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 689 653 690 692 653 672 675 673 687 711 700 692 676 622 702 614 577 504 425 251 255 2061 2596 2195 430 166 240 34 208 671 761 634 602 593 548 577 582 613 631 614 608 704 657 653 654 654 615 692 654 661 ]
C [ 665 690 701 725 741 714 689 651 645 630 698 657 689 732 680 765 831 789 366 64 27 51 65 116 420 1511 2440 2658 2352 762 539 732 715 739 833 772 771 833 772 760 722 698 668 737 715 734 732 670 691 700 ]
G [ 682 748 665 664 653 695 694 738 731 728 691 740 751 762 756 790 592 620 1088 2276 2361 558 42 106 712 101 13 20 85 369 693 758 727 705 697 644 670 628 669 678 691 703 712 701 684 694 678 723 659 686 ]
T [ 681 626 661 636 670 636 659 655 654 648 628 628 601 601 579 548 717 804 838 126 74 47 14 300 1155 939 24 5 72 915 724 593 673 680 639 724 694 643 645 665 696 612 680 626 664 635 692 632 713 670 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.04 -0.00 0.06 0.09 0.06 -0.01 -0.03 -0.00 -0.02 -0.03 -0.01 0.00 -0.00 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.02 -0.02 -0.07 -0.06 -0.03 -0.03 -0.01 0.05 0.09 0.11 0.08 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.02 0.04 0.08 0.08 0.03 -0.03 -0.04 -0.02 -0.06 -0.06 -0.02 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.01 0.00 0.00 -0.02 -0.03 -0.03 -0.03 -0.04 0.01 0.04 0.03 -0.04 -0.08 -0.05 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 29

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 24

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
  • 1 (current)