Detailed information of deep learning profile BP000830.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM18951 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000830.1
Cell line/tissue: GM18951
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EBD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.06 0.04 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.07 0.09 0.06 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 0.07 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1721 1746 1715 1767 1728 1743 1765 1687 1714 1651 1703 1673 1678 1726 1635 1659 1814 1479 1535 1284 1082 397 95 4778 6121 5086 889 392 830 21 327 1731 1826 1580 1503 1496 1567 1565 1517 1551 1690 1635 1664 1769 1682 1605 1621 1662 1613 1639 ]
C [ 1616 1610 1634 1681 1709 1716 1759 1760 1696 1704 1636 1635 1713 1683 1783 1766 1565 1994 1964 1906 726 61 19 171 244 201 957 3855 5899 6727 6204 1670 1323 1871 1821 1871 1852 1831 1970 2021 1891 1865 1761 1735 1671 1784 1797 1848 1798 1700 ]
G [ 1770 1769 1711 1711 1647 1654 1605 1697 1673 1759 1794 1803 1839 1734 1773 1852 1865 1783 1482 1518 2666 6120 6539 1621 238 234 1843 150 4 5 125 731 1849 1848 1676 1642 1610 1582 1617 1514 1595 1627 1678 1645 1708 1714 1689 1647 1651 1724 ]
T [ 1650 1632 1697 1598 1673 1644 1628 1613 1674 1643 1624 1646 1527 1614 1566 1480 1513 1501 1776 2049 2283 179 104 187 154 1236 3068 2360 24 4 101 2625 1759 1458 1757 1748 1728 1779 1653 1671 1581 1630 1654 1608 1696 1654 1650 1600 1695 1694 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 -0.02 -0.02 -0.01 0.04 0.06 0.05 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.02 -0.01 -0.05 -0.03 -0.01 -0.02 0.01 0.04 0.08 0.09 0.07 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.07 0.07 0.03 -0.00 -0.02 0.00 -0.04 -0.05 -0.02 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 -0.02 -0.01 -0.02 -0.02 0.02 0.04 0.03 -0.03 -0.04 -0.03 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 999

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 953

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 455

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 283

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 90

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 27

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
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