Detailed information of deep learning profile BP000830.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM18951 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000830.1
Cell line/tissue: GM18951
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EBD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.07 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.06 0.09 0.07 0.03 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.04 0.06 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1694 1695 1600 1650 1654 1696 1608 1654 1630 1581 1671 1653 1779 1728 1748 1757 1458 1759 2625 101 4 24 2360 3068 1236 154 187 104 179 2283 2049 1776 1501 1513 1480 1566 1614 1527 1646 1624 1643 1674 1613 1628 1644 1673 1598 1697 1632 1650 ]
C [ 1724 1651 1647 1689 1714 1708 1645 1678 1627 1595 1514 1617 1582 1610 1642 1676 1848 1849 731 125 5 4 150 1843 234 238 1621 6539 6120 2666 1518 1482 1783 1865 1852 1773 1734 1839 1803 1794 1759 1673 1697 1605 1654 1647 1711 1711 1769 1770 ]
G [ 1700 1798 1848 1797 1784 1671 1735 1761 1865 1891 2021 1970 1831 1852 1871 1821 1871 1323 1670 6204 6727 5899 3855 957 201 244 171 19 61 726 1906 1964 1994 1565 1766 1783 1683 1713 1635 1636 1704 1696 1760 1759 1716 1709 1681 1634 1610 1616 ]
T [ 1639 1613 1662 1621 1605 1682 1769 1664 1635 1690 1551 1517 1565 1567 1496 1503 1580 1826 1731 327 21 830 392 889 5086 6121 4778 95 397 1082 1284 1535 1479 1814 1659 1635 1726 1678 1673 1703 1651 1714 1687 1765 1743 1728 1767 1715 1746 1721 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 -0.03 -0.04 -0.03 0.03 0.04 0.02 -0.02 -0.02 -0.01 -0.02 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.02 -0.05 -0.04 0.00 -0.02 -0.00 0.03 0.07 0.07 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.07 0.09 0.08 0.04 0.01 -0.02 -0.01 -0.03 -0.05 -0.01 0.02 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 0.05 0.06 0.04 -0.01 -0.02 -0.02 -0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 999

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 953

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 455

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 283

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 90

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 27

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
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