Detailed information of deep learning profile BP000538.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000538.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR720DXT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.01 0.00 0.01 0.06 0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 0.00 0.04 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2398 2385 2361 2304 2349 2363 2381 2391 2447 2384 2525 2289 2317 2257 2384 2919 2593 4449 83 4199 8602 2 7541 1384 2583 2189 2067 24 800 2028 1486 1472 2008 2321 2146 2431 2306 2374 2508 2389 2494 2395 2349 2387 2249 2379 2385 2434 2479 2392 ]
C [ 1940 1944 2043 1942 1914 2080 2043 2131 2106 1989 1876 1980 1845 1718 2334 2379 2087 94 10 823 4 8677 66 2070 1703 2944 739 24 504 2054 5220 3211 2176 1563 1981 2012 2182 2230 2030 1898 1790 1799 1954 1957 1971 1912 1960 1983 1885 1973 ]
G [ 1940 1931 1890 1998 1894 1911 1893 1845 1865 1907 1846 2107 2178 2222 1807 1186 1984 2846 8554 1501 25 0 456 1969 1514 2023 457 8622 350 1559 175 490 1706 2028 1937 1747 1859 1828 1820 1961 2020 2048 1997 1963 1965 1997 1891 1946 2065 1945 ]
T [ 2407 2425 2391 2441 2528 2331 2368 2318 2267 2405 2438 2309 2345 2488 2160 2201 2021 1296 38 2162 54 6 622 3262 2885 1529 5422 15 7031 3044 1804 3512 2795 2773 2621 2495 2338 2253 2327 2437 2381 2443 2385 2378 2500 2397 2449 2322 2256 2375 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 0.00 0.02 -0.01 0.01 0.06 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.02 -0.05 -0.01 -0.04 0.09 -0.04 0.01 0.00 0.01 0.02 -0.02 -0.02 0.00 0.05 0.02 0.01 -0.00 0.00 0.00 ]
G [ 0.01 0.00 -0.01 0.01 0.02 0.06 -0.00 -0.02 -0.03 0.02 -0.00 -0.00 0.01 -0.03 0.08 -0.03 -0.01 -0.04 -0.01 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.05 0.05 0.01 -0.00 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4537

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4035

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1089

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1079

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 956

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 496

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 70

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 34

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
BP000534.1 NR3C1 ENCSR471EKW A549 Homo sapiens MA0113.4
BP000535.1 NR3C1 ENCSR660RYY A549 Homo sapiens MA0113.4
BP000536.1 NR3C1 ENCSR686PFM A549 Homo sapiens MA0113.4
BP000537.1 NR3C1 ENCSR691GRA A549 Homo sapiens MA0113.4
BP000539.1 NR3C1 ENCSR773NQB A549 Homo sapiens MA0113.4
BP000540.1 NR3C1 ENCSR857QEA A549 Homo sapiens MA0113.4
BP000541.1 NR3C1 ENCSR908AOO A549 Homo sapiens MA0113.4
BP000542.1 NR3C1 ENCSR919OXR A549 Homo sapiens MA0113.4
BP000543.1 NR3C1 ENCSR952GOL A549 Homo sapiens MA0113.4
Showing 10 profiles of page 2 from 2 pages