Detailed information of deep learning profile BP000540.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000540.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR857QEA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.03 -0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.05 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.03 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.05 0.00 0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 1706 1694 1780 1748 1783 1661 1749 1753 1677 1744 1724 1656 1656 1783 1863 2063 2035 2551 1032 2416 5495 20 4456 1048 2288 2647 653 33 48 1539 33 887 1361 1644 1516 1707 1649 1688 1765 1698 1620 1703 1682 1751 1767 1761 1767 1751 1790 1728 ]
C [ 1427 1417 1435 1464 1404 1445 1445 1527 1486 1477 1290 1336 1392 1339 1430 1531 1273 318 62 1048 150 6091 200 1461 1015 1250 507 2 15 1037 6249 1898 1374 757 1361 1886 1666 1533 1386 1387 1386 1375 1399 1401 1441 1469 1418 1453 1440 1510 ]
G [ 1495 1522 1502 1475 1499 1448 1503 1362 1400 1411 1501 1675 1587 1544 1552 1176 1617 2466 4442 1553 253 77 596 2630 1244 1516 80 6308 2 627 2 91 1828 1772 1850 1264 1344 1472 1419 1590 1567 1579 1572 1533 1475 1484 1523 1481 1479 1448 ]
T [ 1715 1710 1626 1656 1657 1789 1646 1701 1780 1711 1828 1676 1708 1677 1498 1573 1418 1008 807 1326 445 155 1091 1204 1796 930 5103 0 6278 3140 59 3467 1780 2170 1616 1486 1684 1650 1773 1668 1770 1686 1690 1658 1660 1629 1635 1658 1634 1657 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 -0.00 0.01 -0.00 0.01 0.04 -0.04 0.02 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.03 -0.00 -0.02 0.06 -0.02 0.01 0.00 0.00 0.02 -0.02 -0.01 0.00 0.05 0.01 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.00 -0.00 0.00 0.01 0.04 0.00 -0.01 -0.01 0.02 0.01 0.00 0.01 -0.03 0.07 -0.03 -0.01 -0.03 -0.01 0.01 0.01 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 0.00 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.00 0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11434

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4391

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3231

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1534

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1181

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 632

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 612

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 609

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 603

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 111

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 89

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 41

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 39

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 28

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 26

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 20

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages