Detailed information of deep learning profile BP000531.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000531.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR385RUW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 0.01 -0.00 0.00 0.04 0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.03 -0.00 0.05 0.01 -0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

A [ 1683 1614 1597 1750 1652 1783 1631 1709 1696 1641 1722 1645 1595 1716 1768 1866 2043 1926 2449 1170 2017 4968 4 4128 1145 2109 2419 553 0 50 1535 45 887 1422 1633 1551 1751 1625 1645 1654 1746 1591 1670 1632 1657 1754 1704 1612 1674 1672 ]
C [ 1369 1395 1338 1309 1378 1302 1400 1336 1442 1420 1324 1258 1280 1263 1226 1330 1397 1210 311 115 1100 245 6030 265 1414 1019 1213 400 0 18 972 5940 1964 1359 814 1237 1544 1522 1364 1346 1278 1301 1296 1332 1341 1345 1369 1379 1362 1363 ]
G [ 1335 1314 1366 1350 1358 1364 1351 1371 1245 1202 1302 1431 1555 1473 1395 1405 1054 1503 2181 3745 1419 293 14 418 2154 1150 1492 75 6060 3 540 4 77 1467 1635 1652 1189 1296 1420 1335 1386 1463 1467 1392 1409 1264 1367 1398 1346 1405 ]
T [ 1674 1738 1760 1652 1673 1612 1679 1645 1678 1798 1713 1727 1631 1609 1672 1460 1567 1422 1120 1031 1525 555 13 1250 1348 1783 937 5033 1 5990 3014 72 3133 1813 1979 1621 1577 1618 1632 1726 1651 1706 1628 1705 1654 1698 1621 1672 1679 1621 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 -0.00 0.01 -0.00 0.01 0.05 -0.04 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 -0.04 -0.01 -0.03 0.07 -0.03 0.01 -0.00 -0.00 0.02 -0.02 -0.02 -0.00 0.05 0.02 0.01 -0.01 0.00 0.01 ]
G [ 0.00 0.00 -0.00 0.01 0.01 0.05 -0.00 -0.02 -0.02 0.02 0.01 -0.00 0.01 -0.04 0.08 -0.03 -0.01 -0.04 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.05 0.05 0.01 -0.00 0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3292

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3229

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1137

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1043

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1001

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 886

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 206

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 186

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages