Detailed information of deep learning profile BP000525.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000525.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BHG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 0.00 -0.00 0.00 -0.00 0.00 0.05 -0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.07 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.05 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.11 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.04 0.00 0.07 0.01 0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

A [ 1514 1478 1540 1509 1542 1516 1570 1479 1490 1537 1518 1439 1447 1476 1583 1702 1709 2303 913 2035 4866 22 3536 899 2011 2418 347 4 53 1180 62 714 1305 1350 1317 1506 1544 1525 1511 1515 1469 1501 1587 1538 1537 1590 1491 1544 1510 1528 ]
C [ 1432 1442 1390 1394 1377 1433 1428 1462 1438 1384 1308 1358 1351 1436 1476 1435 1265 262 122 1105 261 5516 319 1504 1032 1179 404 1 15 1134 5632 2192 1458 841 1294 1687 1523 1487 1395 1303 1356 1324 1326 1350 1421 1395 1382 1404 1465 1368 ]
G [ 1361 1356 1378 1396 1430 1371 1402 1336 1314 1405 1439 1575 1515 1514 1458 1181 1588 2294 4123 1538 271 133 664 2253 1123 1418 30 5840 4 605 5 71 1355 1783 1832 1277 1290 1333 1346 1481 1476 1518 1434 1485 1386 1383 1435 1407 1381 1336 ]
T [ 1538 1569 1537 1546 1496 1525 1445 1568 1603 1519 1580 1473 1532 1419 1328 1527 1283 986 687 1167 447 174 1326 1189 1679 830 5064 0 5773 2926 146 2868 1727 1871 1402 1375 1488 1500 1593 1546 1544 1502 1498 1472 1501 1477 1537 1490 1489 1613 ]

Hypothetical CWM

A [ -0.00 0.00 -0.00 0.01 -0.00 0.01 0.06 -0.05 0.04 -0.00 0.01 0.02 -0.01 0.00 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.01 -0.04 -0.00 -0.02 0.09 -0.03 0.02 0.01 0.00 0.04 -0.03 -0.02 0.01 0.07 0.02 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.02 0.06 0.01 -0.01 -0.02 0.03 0.01 0.01 0.02 -0.04 0.11 -0.03 -0.01 -0.04 -0.01 0.01 0.02 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.04 -0.06 0.07 0.02 -0.00 0.02 0.00 0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4404

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2025

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 583

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 493

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 379

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 312

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 231

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 73

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages