Detailed information of deep learning profile BP000542.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000542.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR919OXR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 0.00 0.01 0.06 0.00 0.03 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.01 -0.00 0.04 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

A [ 2619 2650 2597 2552 2609 2613 2657 2615 2668 2660 2789 2587 2610 2562 2592 3236 2881 5011 132 4740 9486 0 8517 1479 2800 2359 2171 546 807 2074 1509 1619 2197 2465 2406 2624 2580 2601 2777 2696 2775 2728 2582 2629 2558 2695 2616 2795 2757 2727 ]
C [ 2169 2095 2210 2154 2110 2290 2236 2338 2340 2247 2008 2185 2009 1824 2564 2621 2266 113 13 808 7 9559 48 2114 1789 3348 1335 323 460 2241 6041 3475 2272 1717 2031 2224 2443 2372 2209 2073 1972 1981 2151 2148 2186 2136 2165 2084 2040 2110 ]
G [ 2092 2188 2172 2189 2105 2022 2070 2008 2041 2032 2080 2288 2348 2462 2107 1284 2221 3157 9369 1672 22 1 413 2110 1603 2155 481 8540 403 1686 212 537 1968 2343 2184 2051 1991 2051 2039 2135 2220 2278 2178 2187 2118 2146 2114 2132 2286 2082 ]
T [ 2687 2634 2588 2672 2743 2642 2604 2606 2518 2628 2690 2507 2600 2719 2304 2426 2199 1286 53 2347 52 7 589 3864 3375 1705 5580 158 7897 3566 1805 3936 3130 3042 2946 2668 2553 2543 2542 2663 2600 2580 2656 2603 2705 2590 2672 2556 2484 2648 ]

Hypothetical CWM

A [ -0.00 0.00 0.01 0.00 0.02 -0.01 0.01 0.06 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.02 -0.04 -0.01 -0.03 0.08 -0.04 0.01 0.00 0.01 0.02 -0.02 -0.01 0.00 0.05 0.02 0.01 -0.00 0.00 0.00 ]
G [ 0.01 0.00 -0.01 0.01 0.02 0.06 -0.00 -0.02 -0.03 0.02 -0.00 -0.00 0.01 -0.03 0.07 -0.03 -0.01 -0.04 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.01 0.01 -0.00 0.03 -0.05 0.05 0.01 -0.00 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4588

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2911

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2275

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1158

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 811

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 440

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 316

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 288

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 56

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 34

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 33

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 23

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages