Detailed information of deep learning profile BP000534.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000534.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR471EKW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 0.00 0.01 0.06 0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 -0.00 0.04 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 3190 3151 3034 3002 3135 3132 3095 3113 3234 3177 3376 3082 3026 2998 3060 4055 3427 6155 111 5690 11448 1 10071 1739 3351 2843 2577 106 820 2579 1666 2072 2648 2958 2816 3099 3056 3006 3388 3264 3287 3157 3089 3140 3128 3076 3054 3304 3275 3123 ]
C [ 2609 2582 2739 2657 2562 2747 2735 2829 2793 2715 2444 2540 2534 2234 3165 3076 2862 183 3 1148 3 11539 50 2488 2215 3982 1134 143 519 2805 7576 4276 2673 2055 2617 2890 2974 3026 2695 2535 2436 2547 2562 2635 2596 2598 2717 2649 2538 2757 ]
G [ 2547 2615 2663 2680 2582 2520 2585 2498 2491 2552 2502 2807 2878 3105 2523 1499 2717 3651 11386 1903 20 2 676 2801 2034 2674 553 11280 314 1951 178 627 2509 2886 2561 2388 2385 2430 2401 2587 2653 2731 2740 2679 2564 2714 2557 2567 2726 2551 ]
T [ 3199 3197 3109 3206 3266 3146 3130 3105 3027 3101 3223 3116 3107 3208 2797 2915 2539 1556 45 2804 74 3 748 4517 3945 2046 7281 16 9892 4210 2125 4570 3715 3646 3551 3168 3130 3083 3061 3159 3169 3110 3154 3091 3257 3157 3217 3025 3006 3114 ]

Hypothetical CWM

A [ -0.00 0.00 0.01 -0.00 0.02 -0.00 0.01 0.06 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.01 -0.01 -0.04 -0.01 -0.04 0.09 -0.04 0.01 0.00 0.01 0.02 -0.02 -0.02 0.00 0.05 0.02 0.01 -0.00 0.00 ]
G [ 0.01 0.00 -0.01 0.01 0.02 0.06 0.00 -0.02 -0.03 0.03 0.00 0.00 0.01 -0.03 0.08 -0.03 -0.00 -0.04 -0.01 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.01 0.01 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11609

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3826

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2490

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1521

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1120

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 673

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 660

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 649

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 606

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 575

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 255

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 248

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 107

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 65

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 55

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 49

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 39

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages