Detailed information of deep learning profile BP000535.1

  1. Home
  2. Deep Learning Profile > BP000535.1
This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000535.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR660RYY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.04 -0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.04 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.05 0.00 0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1016 996 956 1056 1025 1118 1020 1032 1024 1015 1070 1018 1016 1014 1022 1183 1271 1231 1694 650 1591 3246 18 2315 589 1144 1241 184 10 86 988 44 651 862 1007 950 1059 1018 1004 1081 1070 1021 1028 1032 1075 1052 1054 993 1097 1029 ]
C [ 897 905 905 858 863 818 916 877 937 926 866 857 904 843 840 948 954 855 172 74 627 142 3680 193 924 734 1060 181 0 31 739 3705 1255 986 592 882 997 932 968 859 834 819 843 879 846 898 861 893 880 882 ]
G [ 816 807 865 861 870 836 844 833 788 776 804 896 871 928 922 771 598 881 1361 2555 763 166 41 411 1114 614 835 12 3822 3 376 6 43 888 979 954 703 803 852 774 841 901 892 859 845 830 862 861 833 863 ]
T [ 1105 1126 1108 1059 1076 1062 1054 1092 1085 1117 1094 1063 1043 1049 1050 932 1011 867 607 555 853 280 95 915 1207 1342 698 3457 2 3714 1731 79 1885 1098 1256 1048 1075 1081 1010 1120 1089 1093 1071 1064 1068 1054 1057 1087 1024 1060 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 -0.01 0.01 0.05 -0.04 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.01 -0.04 -0.01 -0.03 0.07 -0.03 0.01 -0.00 -0.00 0.02 -0.03 -0.02 -0.01 0.05 0.01 0.01 -0.01 0.00 ]
G [ 0.00 -0.01 0.01 0.01 0.05 -0.00 -0.02 -0.02 0.02 0.00 -0.00 0.01 -0.04 0.08 -0.04 -0.01 -0.04 -0.01 0.00 0.01 0.00 ]
T [ -0.01 -0.00 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.01 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2616

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 361

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 39

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages