Detailed information of deep learning profile BP000543.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000543.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR952GOL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.04 -0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.06 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.04 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.05 0.01 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1063 1019 1009 1082 1043 1101 1035 1104 1029 1016 1063 1021 977 1046 1074 1200 1323 1206 1632 648 1361 3194 12 2365 665 1343 1503 204 21 25 928 34 532 900 1019 933 1114 1102 1031 1021 1078 1023 1069 1049 1011 1042 1051 1052 1089 1069 ]
C [ 830 870 843 846 820 831 861 830 954 871 834 819 848 860 810 844 831 788 167 81 699 124 3685 172 883 620 771 199 2 6 601 3709 1284 884 497 798 1010 919 849 874 806 840 801 845 872 871 870 841 868 846 ]
G [ 874 856 877 911 908 878 890 845 798 819 872 891 957 907 940 868 706 960 1370 2569 842 146 40 368 1415 716 935 18 3801 6 308 9 38 866 1114 1068 701 821 917 836 861 905 921 900 896 848 887 882 859 890 ]
T [ 1060 1082 1098 988 1056 1017 1041 1048 1046 1121 1058 1096 1045 1014 1003 915 967 873 658 529 925 363 90 922 864 1148 618 3406 3 3790 1990 75 1973 1177 1197 1028 1002 985 1030 1096 1082 1059 1036 1033 1048 1066 1019 1052 1011 1022 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.01 -0.01 0.01 0.05 -0.04 0.03 0.00 0.01 0.01 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.03 -0.00 -0.03 0.07 -0.03 0.01 -0.00 -0.00 0.02 -0.03 -0.02 -0.00 0.06 0.02 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.02 0.05 -0.00 -0.02 -0.02 0.02 0.01 0.00 0.01 -0.03 0.08 -0.03 -0.01 -0.03 -0.02 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.01 0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3493

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2835

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 919

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 355

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 62

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 39

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages