Detailed information of deep learning profile BP000539.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000539.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR773NQB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 0.00 0.01 0.06 0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 0.00 0.04 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 2481 2461 2436 2427 2455 2534 2440 2568 2545 2538 2651 2480 2483 2365 2463 3038 2700 4771 124 4349 9012 1 8115 1428 2712 2317 2230 24 762 2158 1495 1552 2106 2325 2212 2492 2470 2463 2673 2588 2650 2557 2478 2518 2474 2466 2486 2600 2648 2554 ]
C [ 2066 2018 2111 2077 2024 2134 2142 2176 2195 2110 1976 2107 1965 1808 2470 2414 2174 105 6 874 3 9120 34 2146 1748 3127 812 36 472 2135 5577 3326 2206 1673 2065 2178 2283 2353 2157 1994 1881 1877 1981 2017 2046 2048 2088 2060 1974 2047 ]
G [ 2071 2136 2059 2080 2040 2022 2070 1908 1971 1967 1992 2129 2270 2364 1963 1300 2190 2892 8963 1615 26 0 482 2088 1651 2112 490 9056 326 1506 195 514 1834 2171 2041 1859 1960 1900 1881 2010 2126 2179 2142 2122 2051 2093 1997 2014 2147 2021 ]
T [ 2506 2509 2518 2540 2605 2434 2472 2472 2413 2509 2505 2408 2406 2587 2228 2372 2060 1356 31 2286 83 3 493 3462 3013 1568 5592 8 7564 3325 1857 3732 2978 2955 2806 2595 2411 2408 2413 2532 2467 2511 2523 2467 2553 2517 2553 2450 2355 2502 ]

Hypothetical CWM

A [ -0.00 0.00 0.01 0.00 0.02 -0.00 0.01 0.06 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.04 -0.01 -0.04 0.08 -0.04 0.01 0.00 0.01 0.02 -0.02 -0.02 0.00 0.05 0.02 0.01 -0.00 0.00 0.01 ]
G [ 0.01 0.00 -0.01 0.01 0.02 0.06 0.00 -0.02 -0.03 0.02 0.00 0.00 0.01 -0.03 0.07 -0.03 -0.01 -0.04 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.01 0.01 -0.00 0.03 -0.05 0.05 0.01 -0.00 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5874

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3093

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2463

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1600

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1077

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1076

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 560

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 414

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 295

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 36

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 20

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages