Detailed information of deep learning profile BP000537.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000537.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR691GRA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.05 0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.06 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.05 0.01 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 913 933 966 927 995 966 963 905 983 950 982 921 871 908 934 1150 1043 1845 37 1360 3055 3 2844 621 1270 1177 635 95 159 689 488 477 878 887 847 994 942 908 989 984 987 983 954 942 932 957 932 999 1024 960 ]
C [ 792 719 760 772 730 766 824 797 781 802 715 753 722 677 922 885 818 47 2 374 65 3397 37 747 527 825 291 34 48 652 2281 1489 813 563 698 818 791 857 791 714 744 666 757 781 760 762 777 775 741 766 ]
G [ 789 788 801 782 752 790 725 800 720 760 777 831 873 896 793 532 817 957 3346 701 93 0 201 1116 680 904 149 3266 55 516 86 139 652 896 835 712 736 788 744 776 801 829 748 799 755 769 776 796 742 791 ]
T [ 914 968 881 927 931 886 896 906 924 896 934 903 942 927 759 841 730 559 23 973 195 8 326 924 931 502 2333 13 3146 1551 553 1303 1065 1062 1028 884 939 855 884 934 876 930 949 886 961 920 923 838 901 891 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 0.01 -0.01 0.01 0.05 -0.04 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.04 -0.01 -0.03 0.08 -0.03 0.01 -0.00 0.01 0.02 -0.02 -0.02 -0.00 0.05 0.02 0.01 -0.00 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.02 0.06 -0.00 -0.03 -0.02 0.02 0.01 0.00 0.01 -0.03 0.08 -0.03 -0.01 -0.04 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.05 0.05 0.01 -0.01 0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3112

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2340

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 147

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 74

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
BP000534.1 NR3C1 ENCSR471EKW A549 Homo sapiens MA0113.4
BP000535.1 NR3C1 ENCSR660RYY A549 Homo sapiens MA0113.4
BP000536.1 NR3C1 ENCSR686PFM A549 Homo sapiens MA0113.4
BP000538.1 NR3C1 ENCSR720DXT A549 Homo sapiens MA0113.4
BP000539.1 NR3C1 ENCSR773NQB A549 Homo sapiens MA0113.4
BP000540.1 NR3C1 ENCSR857QEA A549 Homo sapiens MA0113.4
BP000541.1 NR3C1 ENCSR908AOO A549 Homo sapiens MA0113.4
BP000542.1 NR3C1 ENCSR919OXR A549 Homo sapiens MA0113.4
BP000543.1 NR3C1 ENCSR952GOL A549 Homo sapiens MA0113.4
Showing 10 profiles of page 2 from 2 pages