Detailed information of deep learning profile BP000537.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000537.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR691GRA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.01 0.05 0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.06 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.04 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.05 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 891 901 838 923 920 961 886 949 930 876 934 884 855 939 884 1028 1062 1065 1303 553 1551 3146 13 2333 502 931 924 326 8 195 973 23 559 730 841 759 927 942 903 934 896 924 906 896 886 931 927 881 968 914 ]
C [ 791 742 796 776 769 755 799 748 829 801 776 744 788 736 712 835 896 652 139 86 516 55 3266 149 904 680 1116 201 0 93 701 3346 957 817 532 793 896 873 831 777 760 720 800 725 790 752 782 801 788 789 ]
G [ 766 741 775 777 762 760 781 757 666 744 714 791 857 791 818 698 563 813 1489 2281 652 48 34 291 825 527 747 37 3397 65 374 2 47 818 885 922 677 722 753 715 802 781 797 824 766 730 772 760 719 792 ]
T [ 960 1024 999 932 957 932 942 954 983 987 984 989 908 942 994 847 887 878 477 488 689 159 95 635 1177 1270 621 2844 3 3055 1360 37 1845 1043 1150 934 908 871 921 982 950 983 905 963 966 995 927 966 933 913 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 0.01 -0.01 0.01 0.05 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.04 -0.01 -0.03 0.08 -0.03 0.01 0.00 0.01 0.02 -0.02 -0.03 -0.00 0.06 0.02 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.00 -0.00 0.01 0.02 0.05 -0.00 -0.02 -0.02 0.02 0.01 -0.00 0.01 -0.03 0.08 -0.03 -0.01 -0.04 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.01 0.01 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3112

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2340

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 147

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 74

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages