Detailed information of deep learning profile BP000536.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000536.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR686PFM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.05 0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.05 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 0.04 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

A [ 1078 1088 1114 1088 1094 1101 1098 1079 1151 1091 1130 1087 1097 1057 1069 1307 1180 1993 65 1893 3837 0 3540 694 1283 1130 974 84 344 959 638 632 913 1058 976 1086 1087 1110 1132 1105 1139 1096 1126 1101 1061 1117 1112 1156 1148 1104 ]
C [ 891 875 903 886 865 905 900 913 925 898 826 866 814 744 1025 1072 930 65 4 365 3 3931 19 871 683 1264 424 50 146 797 2547 1445 970 672 868 950 957 960 924 858 869 813 822 878 855 912 899 883 859 922 ]
G [ 911 884 888 902 869 864 874 882 814 839 904 916 932 1006 880 573 919 1254 3850 710 47 4 172 992 705 908 207 3804 128 699 75 168 823 924 900 796 865 887 876 853 908 936 884 907 869 890 881 890 879 900 ]
T [ 1072 1105 1047 1076 1124 1082 1080 1078 1062 1124 1092 1083 1109 1145 978 1000 923 640 33 984 65 17 221 1395 1281 650 2347 14 3334 1497 692 1707 1246 1298 1208 1120 1043 995 1020 1136 1036 1107 1120 1066 1167 1033 1060 1023 1066 1026 ]

Hypothetical CWM

A [ 0.00 0.00 0.00 0.01 -0.00 0.01 0.05 -0.04 0.02 -0.00 0.01 0.00 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.01 -0.03 -0.01 -0.03 0.07 -0.03 0.01 -0.00 0.01 0.01 -0.01 -0.02 -0.00 0.04 0.01 0.01 -0.00 0.00 0.01 ]
G [ 0.00 -0.00 0.01 0.01 0.05 -0.00 -0.02 -0.02 0.02 -0.00 -0.00 0.00 -0.02 0.06 -0.03 -0.00 -0.03 -0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.01 0.01 -0.00 0.02 -0.04 0.04 0.01 -0.00 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4170

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2814

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 395

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 382

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 318

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 66

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 56

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
BP000534.1 NR3C1 ENCSR471EKW A549 Homo sapiens MA0113.4
BP000535.1 NR3C1 ENCSR660RYY A549 Homo sapiens MA0113.4
BP000537.1 NR3C1 ENCSR691GRA A549 Homo sapiens MA0113.4
BP000538.1 NR3C1 ENCSR720DXT A549 Homo sapiens MA0113.4
BP000539.1 NR3C1 ENCSR773NQB A549 Homo sapiens MA0113.4
BP000540.1 NR3C1 ENCSR857QEA A549 Homo sapiens MA0113.4
BP000541.1 NR3C1 ENCSR908AOO A549 Homo sapiens MA0113.4
BP000542.1 NR3C1 ENCSR919OXR A549 Homo sapiens MA0113.4
BP000543.1 NR3C1 ENCSR952GOL A549 Homo sapiens MA0113.4
Showing 10 profiles of page 2 from 2 pages