Detailed information of deep learning profile BP000536.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000536.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR686PFM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.04 -0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.05 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.05 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 1026 1066 1023 1060 1033 1167 1066 1120 1107 1036 1136 1020 995 1043 1120 1208 1298 1246 1707 692 1497 3334 14 2347 650 1281 1395 221 17 65 984 33 640 923 1000 978 1145 1109 1083 1092 1124 1062 1078 1080 1082 1124 1076 1047 1105 1072 ]
C [ 900 879 890 881 890 869 907 884 936 908 853 876 887 865 796 900 924 823 168 75 699 128 3804 207 908 705 992 172 4 47 710 3850 1254 919 573 880 1006 932 916 904 839 814 882 874 864 869 902 888 884 911 ]
G [ 922 859 883 899 912 855 878 822 813 869 858 924 960 957 950 868 672 970 1445 2547 797 146 50 424 1264 683 871 19 3931 3 365 4 65 930 1072 1025 744 814 866 826 898 925 913 900 905 865 886 903 875 891 ]
T [ 1104 1148 1156 1112 1117 1061 1101 1126 1096 1139 1105 1132 1110 1087 1086 976 1058 913 632 638 959 344 84 974 1130 1283 694 3540 0 3837 1893 65 1993 1180 1307 1069 1057 1097 1087 1130 1091 1151 1079 1098 1101 1094 1088 1114 1088 1078 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 0.00 0.01 -0.00 0.01 0.04 -0.04 0.02 -0.00 0.01 0.01 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 -0.03 -0.00 -0.03 0.06 -0.02 0.00 -0.00 -0.00 0.02 -0.02 -0.02 -0.00 0.05 0.01 0.01 -0.00 0.00 ]
G [ 0.01 0.00 -0.00 0.01 0.01 0.04 -0.00 -0.02 -0.01 0.01 0.01 -0.00 0.01 -0.03 0.07 -0.03 -0.01 -0.03 -0.01 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.00 0.01 -0.00 0.02 -0.04 0.05 0.01 -0.00 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4170

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2814

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 395

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 382

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 318

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 66

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 56

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages