Detailed information of deep learning profile BP000533.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000533.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR458VTP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.05 0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.07 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.04 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.10 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.07 0.01 0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3500 3301 3398 3503 3499 3621 3349 3458 3467 3493 3501 3401 3365 3438 3607 3806 4007 4233 4802 2537 4795 11025 12 8123 2202 4386 4910 804 1 87 3074 33 1887 2884 3348 3117 3613 3430 3341 3403 3390 3306 3381 3450 3456 3625 3523 3454 3472 3505 ]
C [ 2822 2992 2862 2866 2969 2794 3076 3104 3143 2975 2882 2664 2725 2779 2684 3019 3270 2495 680 206 2185 357 12722 619 3011 2263 2987 810 0 40 2355 12669 3600 2970 1748 2841 3411 3193 3126 2825 2842 2771 2774 2894 2820 2876 2968 2929 2982 2854 ]
G [ 2886 2921 2945 2997 2818 2917 2870 2848 2657 2685 2856 3049 3304 3222 3049 2843 2259 3056 5246 8136 3060 536 30 1078 4359 2354 2787 44 12785 5 1208 3 166 3322 3283 3417 2426 2709 2849 2820 2992 3086 3104 3007 3029 2813 2917 3021 2862 2952 ]
T [ 3579 3573 3582 3421 3501 3455 3492 3377 3520 3634 3548 3673 3393 3348 3447 3119 3251 3003 2059 1908 2747 869 23 2967 3215 3784 2103 11129 1 12655 6150 82 7134 3611 4408 3412 3337 3455 3471 3739 3563 3624 3528 3436 3482 3473 3379 3383 3471 3476 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.02 -0.00 0.01 0.06 -0.06 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.05 -0.01 -0.03 0.09 -0.03 0.01 0.00 0.00 0.03 -0.02 -0.02 0.00 0.07 0.02 0.01 -0.01 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.02 0.06 0.01 -0.02 -0.01 0.02 0.01 0.00 0.01 -0.04 0.10 -0.04 -0.01 -0.05 -0.02 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.04 -0.06 0.07 0.02 -0.00 0.02 0.00 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 10021

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3603

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1051

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 999

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 915

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 566

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 468

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 432

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 431

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 198

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 95

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 53

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 40

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 32

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 31

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000534.1 NR3C1 ENCSR471EKW A549 Homo sapiens MA0113.4
BP000535.1 NR3C1 ENCSR660RYY A549 Homo sapiens MA0113.4
BP000536.1 NR3C1 ENCSR686PFM A549 Homo sapiens MA0113.4
BP000537.1 NR3C1 ENCSR691GRA A549 Homo sapiens MA0113.4
BP000538.1 NR3C1 ENCSR720DXT A549 Homo sapiens MA0113.4
BP000539.1 NR3C1 ENCSR773NQB A549 Homo sapiens MA0113.4
BP000540.1 NR3C1 ENCSR857QEA A549 Homo sapiens MA0113.4
BP000541.1 NR3C1 ENCSR908AOO A549 Homo sapiens MA0113.4
BP000542.1 NR3C1 ENCSR919OXR A549 Homo sapiens MA0113.4
BP000543.1 NR3C1 ENCSR952GOL A549 Homo sapiens MA0113.4
Showing 10 profiles of page 2 from 2 pages