Detailed information of deep learning profile BP000529.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000529.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR255CTA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.03 -0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 -0.00 0.04 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 695 681 674 720 691 717 694 715 697 672 676 672 633 652 758 811 778 791 912 425 919 2120 22 1746 422 873 977 256 12 51 623 28 341 515 610 586 716 709 694 644 675 668 672 716 691 741 672 707 721 696 ]
C [ 588 584 573 578 572 580 577 577 609 604 581 551 575 593 512 595 588 462 135 58 454 89 2461 120 623 432 542 165 2 16 410 2486 694 616 336 572 708 651 604 600 586 563 582 535 584 585 587 572 574 587 ]
G [ 597 547 582 579 583 587 571 566 529 542 581 617 643 617 582 558 470 663 1027 1705 574 85 28 184 900 484 624 28 2536 1 225 3 16 636 662 722 495 521 557 560 583 612 635 588 612 565 593 578 587 581 ]
T [ 673 741 724 676 707 669 711 695 718 735 715 713 702 691 701 589 717 637 479 365 606 259 42 503 608 764 410 2104 3 2485 1295 36 1502 786 945 673 634 672 698 749 709 710 664 714 666 662 701 696 671 689 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 -0.00 0.01 -0.01 0.01 0.04 -0.03 0.02 -0.01 0.00 0.01 -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 ]
C [ -0.00 0.00 0.00 0.00 -0.01 -0.03 -0.01 -0.03 0.05 -0.03 0.00 -0.00 -0.00 0.01 -0.02 -0.02 -0.01 0.04 0.01 0.00 -0.01 0.00 0.00 ]
G [ 0.00 0.00 -0.01 0.00 0.01 0.04 -0.00 -0.02 -0.02 0.01 0.00 -0.00 0.00 -0.03 0.06 -0.03 -0.01 -0.03 -0.02 0.00 0.00 0.00 -0.00 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 0.00 0.00 -0.01 0.02 -0.03 0.04 0.01 -0.01 0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2621

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2134

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 279

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 180

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 174

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000534.1 NR3C1 ENCSR471EKW A549 Homo sapiens MA0113.4
BP000535.1 NR3C1 ENCSR660RYY A549 Homo sapiens MA0113.4
BP000536.1 NR3C1 ENCSR686PFM A549 Homo sapiens MA0113.4
BP000537.1 NR3C1 ENCSR691GRA A549 Homo sapiens MA0113.4
BP000538.1 NR3C1 ENCSR720DXT A549 Homo sapiens MA0113.4
BP000539.1 NR3C1 ENCSR773NQB A549 Homo sapiens MA0113.4
BP000540.1 NR3C1 ENCSR857QEA A549 Homo sapiens MA0113.4
BP000541.1 NR3C1 ENCSR908AOO A549 Homo sapiens MA0113.4
BP000542.1 NR3C1 ENCSR919OXR A549 Homo sapiens MA0113.4
BP000543.1 NR3C1 ENCSR952GOL A549 Homo sapiens MA0113.4
Showing 10 profiles of page 2 from 2 pages