Detailed information of deep learning profile BP000527.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000527.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BJR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.06 -0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.08 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.05 -0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 -0.00 0.13 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.04 0.00 0.08 0.01 -0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2871 2709 2832 2784 2970 2816 2849 2850 2777 2905 2867 2633 2778 2845 3085 3249 3542 3752 2065 3971 8506 298 6217 1689 3600 3885 936 12 139 2524 109 1791 2290 2897 2413 2975 2927 2893 2873 2914 2735 2864 2824 2957 2981 2972 2840 2862 2884 2915 ]
C [ 2770 2800 2756 2788 2741 2910 2887 2950 2950 2839 2641 2699 2666 2666 2891 3200 2371 921 493 2454 828 9697 806 2965 2327 3085 872 3 63 2642 11059 3635 2990 1791 2768 3230 3039 2957 2732 2563 2608 2620 2756 2784 2777 2800 2750 2818 2847 2758 ]
G [ 2742 2812 2822 2792 2817 2742 2771 2586 2657 2722 2835 3122 3035 3060 2825 2160 2898 4869 7067 2845 907 643 1960 3979 2182 2730 85 11370 37 1306 11 186 2922 3180 3479 2501 2670 2701 2725 2942 3056 3028 2931 2849 2775 2748 2891 2832 2783 2723 ]
T [ 3006 3068 2979 3025 2861 2921 2882 3003 3005 2923 3046 2935 2910 2818 2588 2780 2578 1847 1764 2119 1148 751 2406 2756 3280 1689 9496 4 11150 4917 210 5777 3187 3521 2729 2683 2753 2838 3059 2970 2990 2877 2878 2799 2856 2869 2908 2877 2875 2993 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.02 -0.01 0.01 0.07 -0.07 0.04 -0.00 0.01 0.02 -0.02 -0.01 -0.02 0.01 -0.01 -0.02 -0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.01 -0.05 -0.00 -0.03 0.11 -0.04 0.01 0.01 0.00 0.04 -0.03 -0.02 0.01 0.08 0.03 0.01 -0.00 0.01 0.01 ]
G [ 0.01 -0.00 0.01 0.03 0.07 0.01 -0.02 -0.02 0.03 0.01 0.00 0.01 -0.06 0.13 -0.04 -0.01 -0.06 -0.02 0.01 0.01 0.01 0.00 ]
T [ -0.01 -0.00 -0.00 -0.02 -0.01 0.01 -0.02 -0.01 -0.02 0.01 0.01 -0.01 0.05 -0.09 0.08 0.02 -0.01 0.02 0.00 0.01 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 718

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 574

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 561

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 302

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 26

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000534.1 NR3C1 ENCSR471EKW A549 Homo sapiens MA0113.4
BP000535.1 NR3C1 ENCSR660RYY A549 Homo sapiens MA0113.4
BP000536.1 NR3C1 ENCSR686PFM A549 Homo sapiens MA0113.4
BP000537.1 NR3C1 ENCSR691GRA A549 Homo sapiens MA0113.4
BP000538.1 NR3C1 ENCSR720DXT A549 Homo sapiens MA0113.4
BP000539.1 NR3C1 ENCSR773NQB A549 Homo sapiens MA0113.4
BP000540.1 NR3C1 ENCSR857QEA A549 Homo sapiens MA0113.4
BP000541.1 NR3C1 ENCSR908AOO A549 Homo sapiens MA0113.4
BP000542.1 NR3C1 ENCSR919OXR A549 Homo sapiens MA0113.4
BP000543.1 NR3C1 ENCSR952GOL A549 Homo sapiens MA0113.4
Showing 10 profiles of page 2 from 2 pages