Detailed information of deep learning profile BP000527.1

  1. Home
  2. Deep Learning Profile > BP000527.1
This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000527.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BJR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 -0.00 0.01 0.08 0.00 0.04 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.13 -0.00 0.00 -0.00 0.01 0.01 -0.00 -0.00 -0.00 0.05 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.08 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.10 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 -0.00 0.06 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2993 2875 2877 2908 2869 2856 2799 2878 2877 2990 2970 3059 2838 2753 2683 2729 3521 3187 5777 210 4917 11150 4 9496 1689 3280 2756 2406 751 1148 2119 1764 1847 2578 2780 2588 2818 2910 2935 3046 2923 3005 3003 2882 2921 2861 3025 2979 3068 3006 ]
C [ 2723 2783 2832 2891 2748 2775 2849 2931 3028 3056 2942 2725 2701 2670 2501 3479 3180 2922 186 11 1306 37 11370 85 2730 2182 3979 1960 643 907 2845 7067 4869 2898 2160 2825 3060 3035 3122 2835 2722 2657 2586 2771 2742 2817 2792 2822 2812 2742 ]
G [ 2758 2847 2818 2750 2800 2777 2784 2756 2620 2608 2563 2732 2957 3039 3230 2768 1791 2990 3635 11059 2642 63 3 872 3085 2327 2965 806 9697 828 2454 493 921 2371 3200 2891 2666 2666 2699 2641 2839 2950 2950 2887 2910 2741 2788 2756 2800 2770 ]
T [ 2915 2884 2862 2840 2972 2981 2957 2824 2864 2735 2914 2873 2893 2927 2975 2413 2897 2290 1791 109 2524 139 12 936 3885 3600 1689 6217 298 8506 3971 2065 3752 3542 3249 3085 2845 2778 2633 2867 2905 2777 2850 2849 2816 2970 2784 2832 2709 2871 ]

Hypothetical CWM

   
A [ -0.01 0.00 0.01 0.00 0.02 -0.01 0.02 0.08 -0.09 0.05 -0.01 0.01 0.01 -0.02 -0.01 -0.02 0.01 -0.01 -0.02 -0.00 -0.00 -0.01 ]
C [ 0.00 0.01 0.01 0.01 -0.02 -0.06 -0.01 -0.04 0.13 -0.06 0.01 0.00 0.01 0.03 -0.02 -0.02 0.01 0.07 0.03 0.01 -0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.03 0.08 0.01 -0.02 -0.03 0.04 0.00 0.01 0.01 -0.04 0.11 -0.03 -0.00 -0.05 -0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.02 -0.01 -0.02 0.02 0.01 -0.00 0.04 -0.07 0.07 0.01 -0.01 0.02 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 718

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 574

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 561

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 302

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 26

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages