Detailed information of deep learning profile BP000523.1

  1. Home
  2. Deep Learning Profile > BP000523.1
This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000523.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BHE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 0.01 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 87 117 106 123 106 123 111 126 101 137 128 122 110 108 107 112 153 133 258 18 185 448 1 347 65 158 111 57 27 20 83 36 65 97 108 83 126 105 104 105 110 107 129 120 106 119 114 129 131 126 ]
C [ 136 111 121 125 113 116 122 115 127 112 109 114 117 108 103 155 158 126 17 1 57 0 463 2 119 65 166 49 10 21 113 372 215 140 86 117 118 123 135 127 114 109 101 100 119 105 115 115 117 112 ]
G [ 111 124 129 110 117 122 127 123 110 112 120 132 126 121 144 114 54 130 122 421 92 10 0 61 107 77 145 16 417 6 93 10 15 93 139 142 96 124 124 110 112 133 119 135 120 114 125 115 116 114 ]
T [ 130 112 108 106 128 103 104 100 126 103 107 96 111 127 110 83 99 75 67 24 130 6 0 54 173 164 42 342 10 417 175 46 169 134 131 122 124 112 101 122 128 115 115 109 119 126 110 105 100 112 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 -0.01 -0.00 0.01 -0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.01 -0.00 -0.01 0.02 -0.01 0.00 -0.00 0.00 0.00 -0.01 -0.01 -0.00 0.01 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.00 -0.01 0.02 -0.01 -0.00 -0.01 -0.00 -0.00 0.00 0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.01 -0.00 -0.01 0.00 0.00 -0.01 0.01 -0.01 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 686

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 53

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000534.1 NR3C1 ENCSR471EKW A549 Homo sapiens MA0113.4
BP000535.1 NR3C1 ENCSR660RYY A549 Homo sapiens MA0113.4
BP000536.1 NR3C1 ENCSR686PFM A549 Homo sapiens MA0113.4
BP000537.1 NR3C1 ENCSR691GRA A549 Homo sapiens MA0113.4
BP000538.1 NR3C1 ENCSR720DXT A549 Homo sapiens MA0113.4
BP000539.1 NR3C1 ENCSR773NQB A549 Homo sapiens MA0113.4
BP000540.1 NR3C1 ENCSR857QEA A549 Homo sapiens MA0113.4
BP000541.1 NR3C1 ENCSR908AOO A549 Homo sapiens MA0113.4
BP000542.1 NR3C1 ENCSR919OXR A549 Homo sapiens MA0113.4
BP000543.1 NR3C1 ENCSR952GOL A549 Homo sapiens MA0113.4
Showing 10 profiles of page 2 from 2 pages