Detailed information of deep learning profile BP000523.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000523.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BHE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 0.01 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 112 100 105 110 126 119 109 115 115 128 122 101 112 124 122 131 134 169 46 175 417 10 342 42 164 173 54 0 6 130 24 67 75 99 83 110 127 111 96 107 103 126 100 104 103 128 106 108 112 130 ]
C [ 114 116 115 125 114 120 135 119 133 112 110 124 124 96 142 139 93 15 10 93 6 417 16 145 77 107 61 0 10 92 421 122 130 54 114 144 121 126 132 120 112 110 123 127 122 117 110 129 124 111 ]
G [ 112 117 115 115 105 119 100 101 109 114 127 135 123 118 117 86 140 215 372 113 21 10 49 166 65 119 2 463 0 57 1 17 126 158 155 103 108 117 114 109 112 127 115 122 116 113 125 121 111 136 ]
T [ 126 131 129 114 119 106 120 129 107 110 105 104 105 126 83 108 97 65 36 83 20 27 57 111 158 65 347 1 448 185 18 258 133 153 112 107 108 110 122 128 137 101 126 111 123 106 123 106 117 87 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.01 0.01 -0.01 0.00 0.00 -0.01 -0.00 -0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.00 -0.01 0.02 -0.01 0.00 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 0.01 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 0.01 -0.00 -0.01 -0.01 0.00 0.00 -0.00 0.00 -0.01 0.02 -0.01 -0.00 -0.01 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 -0.00 0.00 -0.00 0.01 -0.01 0.01 -0.00 -0.01 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 686

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 53

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages