Detailed information of deep learning profile BP001113.1

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This page shows detailed deep learning-derived predictions and motifs for SP1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP1
Model ID: BP001113.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0079.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08047  
Source: ENCSR991ELG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.03 0.00 0.03 0.03 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 0.01 0.02 0.00 0.03 0.03 0.01 0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 25 26 35 40 41 38 33 33 32 30 22 12 27 63 63 32 8 16 17 0 12 0 0 0 35 23 50 37 11 15 22 1 20 0 0 1 39 13 39 37 24 28 26 30 28 31 25 31 36 29 ]
C [ 106 110 95 81 109 107 127 134 104 111 117 144 132 89 38 7 182 181 226 245 0 245 245 210 157 123 42 18 180 183 221 243 2 244 244 199 170 120 83 79 108 107 103 104 95 100 129 97 103 108 ]
G [ 87 61 67 82 61 60 54 48 80 71 61 55 55 34 120 177 23 0 2 0 215 0 0 0 8 26 107 145 24 4 2 0 203 0 1 1 4 34 65 91 73 68 80 77 84 70 57 67 66 69 ]
T [ 27 48 48 42 34 40 31 30 29 33 45 34 31 59 24 29 32 48 0 0 18 0 0 35 45 73 46 45 30 43 0 1 20 1 0 44 32 78 58 38 40 42 36 34 38 44 34 50 40 39 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 -0.02 -0.00 -0.02 -0.02 -0.02 0.01 -0.00 0.00 0.01 -0.00 0.00 0.01 -0.02 -0.00 -0.02 -0.02 -0.02 0.01 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.01 0.01 0.01 0.01 0.03 -0.01 0.03 0.03 0.02 0.01 0.00 -0.00 -0.01 0.01 0.01 0.01 0.02 -0.01 0.03 0.03 0.02 0.01 0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 0.00 -0.00 0.01 0.02 0.00 -0.01 -0.01 -0.01 0.02 -0.01 -0.01 -0.02 -0.01 -0.00 0.01 0.02 0.00 -0.01 -0.00 -0.00 0.02 -0.02 -0.01 -0.02 -0.01 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.02 -0.02 -0.00 -0.01 -0.01 0.01 0.00 0.01 0.00 -0.00 0.00 0.00 -0.02 -0.02 -0.00 -0.01 -0.01 0.01 0.00 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 8871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1499

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 806

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 40

CWM

PFM

     

HCWM

7 profiles found for the same TF (SP1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001106.1 SP1 ENCSR000BHK GM12878 Homo sapiens MA0079.5
BP001107.1 SP1 ENCSR000BIR H1 Homo sapiens MA0079.5
BP001108.1 SP1 ENCSR000BKO K562 Homo sapiens MA0079.5
BP001109.1 SP1 ENCSR372IML K562 Homo sapiens MA0079.5
BP001110.1 SP1 ENCSR460YAM HepG2 Homo sapiens MA0079.5
BP001111.1 SP1 ENCSR583CGO WTC11 Homo sapiens MA0079.5
BP001112.1 SP1 ENCSR729LGA MCF-7 Homo sapiens MA0079.5
Showing 7 profiles of page 1 from 1 pages
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